Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01893 ATGTTCGTTTTGGATGAGGCTGATGAGATGCTTTCTCGTGGTTTCAAGGACCAGATCTATGATATCTTCCAGCTGCTGCCACCTAAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCACCAGAAGCCTTGGAGATCACCAGGAAGTTCATGAATAAGCCAGTGAGAATTCTGGTAAAGCGTGATGAATTGACCCTTGAGGGTATTAAGCAGTTTTATGTGAATGTTGACAAGGAAGAATGGAAACTAGAGACATTATGTGACCTTTATGAGACTCTGGCCATCACTCAGAGTGTCATTTTTGTCAACACAAGGCGCAAGGTGGACTGGCTCACTGATAAGATGCGAGGCAGGGACCATACAGTCTCAGCCACCCTTGGAGACATGGACCAAATCACTCGTGATATCATCATGCGTGAATTCCGCTTCGGTTCTTCCAGAATTCTCATTACCACCGACCTCTTGGCTCGTGGTATTGATGTTCAGCAAGTGTCTTTGGTGATAAACTATGATCTTCCTACCCAACCGAAAACCATCAACCCAACCTCTATCAGTTCCGCTTCAAACCAATCGGTCCACACACTAACTGTCACAAACTTCCATTTCAGAACTTCCTATGTCTCCATAACGGCTTCTTTCGCCAATAACCGACCTCACACTTCTTTAATTCCAACCGCGACTCACCCACTCTGTGACCCTTCAAACTTCCTCTCCCTTCATCCATAA 726 0.4545 MFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATLGDMDQITRDIIMREFRFGSSRILITTDLLARGIDVQQVSLVINYDLPTQPKTINPTSISSASNQSVHTLTVTNFHFRTSYVSITASFANNRPHTSLIPTATHPLCDPSNFLSLHP 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01893 241 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 68 231 IPR001650 -
Vifa4g01893 241 Gene3D - 65 190 IPR027417 -
Vifa4g01893 241 Pfam Helicase conserved C-terminal domain 82 178 IPR001650 -
Vifa4g01893 241 Gene3D - 1 64 IPR027417 -
Vifa4g01893 241 Pfam DEAD/DEAH box helicase 2 42 IPR011545 GO:0003676|GO:0005524
Vifa4g01893 241 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 176 - -
Vifa4g01893 241 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 3 11 IPR000629 -
Vifa4g01893 241 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 57 IPR014001 -
Vifa4g01893 241 CDD SF2_C_DEAD 69 178 - -
Vifa4g01893 241 SMART helicmild6 109 205 IPR001650 -
Vifa4g01893 241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 177 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01893 Vifa-Chr4 533341807 533342532 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01893 1 177 Eukaryotic Initiation Factors Gene Family AT1G72730 94.915 7.12e-121 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01893 K03257 - sly:101266108 341.273