Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01881 ATGGCTTTGGAAACTATTATCTATGACACTATTTCTGCAACTCCATTTAGTAGTACCAGTTCTTATCATCATGATACAATAGATTCTTCTTGTTTCTTGGAAAATGCAATGAGCTATGAGCAACAATATCATGAAGGTGCAATATTTGATCAGAACAACAGAAAGAGAGAATTTATGGAGCAAGAGCAAGATGAAACAATGAGTAATAATCAAGTTGTGCAAGGGAGGAAGAAGAGGAGAAGGAAGCCAAGAGTTTGTAAGAACAAAGAAGAAGCTGAGACTCAGAGAATCACTCACATTACAGTTGAGAGAAACCGTCGAAAACAAATGAATGAGCATCTCGCGGTTCTTCGGTCACTCATGCCTGAATCCTATGTTCAAAGGGGTGACCAAGCCTCAATAGTTGGTGGAGCCATAGAGTTTGTGAAGGAACTAGAGCATATCTTGCAATCACTTGAAGCAAGAAAGCTACAACTCTTACAACAAGAACTAGCATTACAACAAAACAACAATGAAGAAACATCCAATATTTCAAACCTCAATAATATCAAACCGCCATTTGCACAATTTTTTGTGTATCCTCAGTACACATGGTCCCAAAATCCTAATAACAAATACACATCCAAGACGAAAGCTGCCATAGCCGATATCGAGGTTACATTAATCGAGACTCATGCAAACCTCAGAATTCTCACTAAAACAAGACCAGGACAGTTAACTAAATTGGTTGATGGTTTTCAAACACTCTTTCTCACCATTCTTCATCTCAATGTCACTACCATTCAACCTTTGGTTTTCTACTCTATCAGTGCCAAGGTTGAAGAAGGATTTCAACTTGGTTCAGTAGATGGCATTGCAACAGCAGTTCATCATTTACTTGGAAGAATTGAGGAAGAAGCTACACTTTGTTGTTAA 915 0.3803 MALETIIYDTISATPFSSTSSYHHDTIDSSCFLENAMSYEQQYHEGAIFDQNNRKREFMEQEQDETMSNNQVVQGRKKRRRKPRVCKNKEEAETQRITHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHILQSLEARKLQLLQQELALQQNNNEETSNISNLNNIKPPFAQFFVYPQYTWSQNPNNKYTSKTKAAIADIEVTLIETHANLRILTKTRPGQLTKLVDGFQTLFLTILHLNVTTIQPLVFYSISAKVEEGFQLGSVDGIATAVHHLLGRIEEEATLCC 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01881 304 MobiDBLite consensus disorder prediction 61 92 - -
Vifa4g01881 304 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 93 166 IPR036638 GO:0046983
Vifa4g01881 304 CDD bHLH_AtFAMA_like 97 156 - -
Vifa4g01881 304 PANTHER MAX DIMERIZATION, MAD 42 301 - -
Vifa4g01881 304 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 94 145 IPR011598 GO:0046983
Vifa4g01881 304 SMART finulus 100 151 IPR011598 GO:0046983
Vifa4g01881 304 Gene3D - 86 171 IPR036638 GO:0046983
Vifa4g01881 304 Pfam Helix-loop-helix DNA-binding domain 95 146 IPR011598 GO:0046983
Vifa4g01881 304 Coils Coil 142 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01881 Vifa-Chr4 529442294 529443603 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01881 86 273 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 55.556 3.23e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa4g01881 HLH 5.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01881 - - pvu:PHAVU_003G284500g 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01881 4 529442294 529443603 Vifa4g01881 4 529442294 529443603 ECH