Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01879 ATGTCTTCATCGGAACTTGATTACAAAATCCCTCCGGCTCCAACATACAGGACACCACCGGCACTAGTGACTCTCGTCCTCACAGTCCTCATCTTAGCCTTTGTGACTTTCAGCATTGTCTATTTTTGTAAGCATTATTTTCAAGGGCTTTTCCATAATTGGGCCTTACAACGCACAGCCTCAGGTTCTGTCGTTCGTGTTTCACCTGAGAGATCACCACCTAGAGGACTCGACAATACCCTTCTAGACAAATTCCCTACTTTTGTTTACTCCTCCGTGAAAGATCTCCGCGAGGAAAAAAGTTACAGCTTGGAATGTGCTATTTGTTTGATGGAGTTCGAGGATGATAGCATGCTGCGTCATCTAACCATCTGCTGTCATGTTTTCCATCAAGAATGTATTGATTTGTGGCTCGAATCTCACAAGACATGTCCCGTTTGTCGAACCGACCTTGATTTAAATCCAAACCAAACGTCGAAACAAGGGGACAACGATAACGAAAACAACAATGATAACAACAATGTTGATGCAGACGAGGCTATGGTGCAGTTCCCATGCGATGCTATACGTATTGATGTTAGAGAAGAGGAAAGAAACAATGTTGGTGAGATCACTGGAGGTCAAATAAATGCCACTAACCAACATGATTGTGAGAATATGAGCATGCCACGAGGAGAAGAACCTAGATTTTCAAAGTCACATTCAACGGGGCATTCTATAGTAATGATTAGAGGTGAAGAAAAAGATAATGCGAAATACACATTGAGATTGCCTGAACATGTTATAAGGGGAGGGCACAACACCTCCAAGAGTTGTACAAATTACAATGAAATGACATTGACAGAGCCAACACCTTGTAGTAATTGTGGTTTTGTTAAACCACTAACTGGCTCCTCTTCACTTGCTCATTCTCAAGACCATTGA 924 0.421 MSSSELDYKIPPAPTYRTPPALVTLVLTVLILAFVTFSIVYFCKHYFQGLFHNWALQRTASGSVVRVSPERSPPRGLDNTLLDKFPTFVYSSVKDLREEKSYSLECAICLMEFEDDSMLRHLTICCHVFHQECIDLWLESHKTCPVCRTDLDLNPNQTSKQGDNDNENNNDNNNVDADEAMVQFPCDAIRIDVREEERNNVGEITGGQINATNQHDCENMSMPRGEEPRFSKSHSTGHSIVMIRGEEKDNAKYTLRLPEHVIRGGHNTSKSCTNYNEMTLTEPTPCSNCGFVKPLTGSSSLAHSQDH 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01879 307 SUPERFAMILY RING/U-box 81 155 - -
Vifa4g01879 307 SMART ring_2 106 147 IPR001841 -
Vifa4g01879 307 PANTHER RING FINGER DOMAIN-CONTAINING 15 157 - -
Vifa4g01879 307 FunFam E3 ubiquitin-protein ligase ATL6 65 154 - -
Vifa4g01879 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 153 IPR013083 -
Vifa4g01879 307 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Vifa4g01879 307 Pfam Ring finger domain 105 148 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01879 Vifa-Chr4 529363408 529364331 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01879 20 271 Rapid Response to Elicitors AT2G35000 34.848 5.64e-40 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01879 - - vum:124822565 289.271