Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01878 ATGCATACCGGAGAACGTCAAGCTGCAAAAATGAGAATGGCATATTTAAGATCAATGTTGAATCAAGACATAAGTCTTTTTGATACTGAACCATCAACTGGACAAGTTATTTCTTCTATTACAACCGACATCATATTCGTTCAAGAAGCATTATCCGAGAAGGTTGGAAACTTTATGCACTACATAAGCCGCTTTATAGCCGGCTTTATAATCGGTTTTTTCAAAGTTTGGCAAACCAGTTTAGTCACACTTGCTATTGTTCCTTTGATTGCTATTGCTGGAGGTCTTTATGCATACGTTTCATTCGGTCTTATTGCAAAAGTTCGTAAATCGTATACGCGGGCTGGTCAAATTGCTCAGGAGGTGTTAGGAAATGTTAGAACTGTACAAGCATTTGGTGGAGAACAAAGAGCAGTGATATCATACAAAGTAGCTTTGAGGAATACATATAAGAATGGTAGAAAAGCAGGTTTAGCAAAGGGTCTTGGACTAGGCTCTATGCATTGTGTTCTTTTTCTATCATGGGCTTTTCTTGTTTGGTTCACCAGCATTGTTGTTCACAAGGGTATTGCAAATGGTGGAGTCGCTTTCACTACCATGCTCAATGTTGTTATCTCCGGCCTGTCACTTGGGCAGGCAGCACCAGACATTTCAGCATTTGTTAGAGCAAAATCGGCAGCTTATCCGTCGCGTCTTGATGTTGTTATTTTCAACAATCTTTGTCATGAGATACCTTCTGCTAAAATTTTGGCACTTGTAGGAGGAAGTGGTTCTGGAAAAAGCACAATTATATCGTTAATCGAGCGTTTCTACGAACCAATTTCTGGTCAGATTCTATTAGATAGAAATGATATAAAAGAACTTGATCTAAAATGGCTTAGACATCAAATTGGACTAGTTAATCAAGAGCCTGCACTCTTTGCTACAACCATAAGGGAGAACATATTGTATGGTAAAAATGATGCCACGCCTGAAGAACTAAACCGTGCTTTGGAACTTTCGGATGCTCACTCATTCATCAACAATCTTCCCGATGGATTAGATACTCAGGTTGGTGAGAGAGGGATACAATTATCAGGAGGACAAAAGCAAAGGATTGCGATATCGCGTGCTATAGTTAAGAATCCATCGATCTTATTATTAGATGAAGCAACTAGTGCTTTGGATGCGGAATCTGAGAAAAGTGTACAAGAGGCTCTTGATCGTGTCATGATTGGTAGAACAACTGTGATAGTTGCACACAGGCTTTCTACAATTAGGAATGCAGATATGATAGCTGTTGTTAAAGGAGGGAGCATTGTGGAAACTGGAAATCATGAAGAGCTCATTTCCGACTCAAATAGTGTATATGTATCTCTTGTTCAAGGCCATCCTTCTTCGGATCCTTCCTTGGAACAATCATCAAGCATAAAGAACTCGGGAGAAACATCGCAGACATCCATTATTGGAGGTAGTTTTCGTTCGGATAAGGACTCTACTGGCCATGCATGTGATGATGAAGCAGAAAGTATTGAAAAGGTGAAGCCTGTTTCATTGATAAGATTATATTCAATGATTGGTCCTTATTGGTCTTATGGAGTTTTTGGAACCTTGGCTGCTTTTGTTACTGGTGCTCTTATGCCACTTTTTGCTCTTGGAATCTCTCATGCTCTTGTATCATACTATATGGATTGGGATAGCACACAACATGAAGTGAAAAAAATTGCTTTCCTTTTCTGTGGAGCAGCGATTTTAGCTATCACTGCTTATTCCATTGAACATCTTTCTTTTGGAATCATGGGAGAGCGACTTACACTACGTGTCAGAGAAATTATGCTTTCTGCTATTTTGAAGAATGAAATTGGTTGGTTTGATGATACAAGAAACACAAGTACTGTGCTTTCATCGCGTTTAGAGAGTGATGCGACTTTGTTAAAAACTATAGTGGTGGATCGTTCTACGATTCTCTTGCAGAATGTTGGTCTAGTTGTTACTGCATTTATAATTGCATTCATTTTGAACTGGAGAATAACACTTGTTGTCTTGGCCACATATCCTTTGATCATTAGTGGTCACATTGGTGAGAAACTTTTCATGCAAGGATTTGGCGGTAACCTAAGCAAAGCATATCTAAAAGCAAACATGTTAGCTGGGGAGGCTGTCAGTAATATAAGGACTGTGGCTGCATTTTGCGCAGAAGAAAAGATTATTGACCTTTATCTTAACGAGCTTGTCGAGCCTTCCAAACGTTCATTCAAACGAGGCCAAATCGCTGGCATATTTTACGGCATTTCCCAGTTCTTTATTTTCTCATCTTATGGCGTAGCCTTGTGGTATGGATCTGTGTTGATTGAAAAGGAGCTTTCTAGCTTTAAATCAATCATGAAGTCATTTATGGTTTTAATAGTAACCGCACTGGCTATGGGGGAGACATTAGCACTTGCACCAGACCTTTTGAAAGGAAATCAAATGGTTTCATCAATTTTCGATATGATTGATAGAAAGTCAGGAGTACTGGATGATATTGGAGAAGACTTGATGACAGTGGAAGGAACGATTGAGCTAAGAAAGATCAATTTCAGCTATCCTTCAAGACCAAACATTGTTATTTTCGATAATTTCAATCTAATGGTGCCTTCAGGAAAGAGTCTTGCCTTGGTTGGGCACAGTGGTTCTGGTAAAAGCTCAATAATCTCACTCATACTAAGATTTTATGATCCAACTTCGGGAAAAGTGATGATTGATGGAAAAGATATCAAGGAAATGAATTTGAAATCGCTTCGGAAGCACATTGGTCTAGTACAGCAAGAACCGGCTCTATTTGCAACATCAATTTACAAAAACATTCTTTATGGCAAAGAAGACGCATCTGAATCAGAAGTGATTGAAGCAGCTAAACTAGCCAATGCTCATAATTTCATTAGTGCACTACCTGAAGGGTACTCAACCAAAGCAGGTGAGAGAGGAGTTCAACTATCCGGTGGCCAAAAACAAAGGGTTGCCATTGCAAGGGCTATTTTGAGAAACCCTGAGATATTACTTCTGGACGAAGCAACAAGCGCACTTGATGTAGAGTCGGAGCGGGTCGTTCAACAAGCTTTAGACAAGTTGATGCAAGACAGAACAACAGTTATTGTGGCACATAGGCTATCCACAATAAGAAATGCAGATCAAATATCAGTTTTGCAGGATGGAAAGATTATTGAACAAGGTACTCATGCAAGTCTTATAGAGAATATAGATGGAGCTTATTTCAAACTAGCCAGCCTACAACAACAAACAGCTACATAA 3270 0.3933 MHTGERQAAKMRMAYLRSMLNQDISLFDTEPSTGQVISSITTDIIFVQEALSEKVGNFMHYISRFIAGFIIGFFKVWQTSLVTLAIVPLIAIAGGLYAYVSFGLIAKVRKSYTRAGQIAQEVLGNVRTVQAFGGEQRAVISYKVALRNTYKNGRKAGLAKGLGLGSMHCVLFLSWAFLVWFTSIVVHKGIANGGVAFTTMLNVVISGLSLGQAAPDISAFVRAKSAAYPSRLDVVIFNNLCHEIPSAKILALVGGSGSGKSTIISLIERFYEPISGQILLDRNDIKELDLKWLRHQIGLVNQEPALFATTIRENILYGKNDATPEELNRALELSDAHSFINNLPDGLDTQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMIGRTTVIVAHRLSTIRNADMIAVVKGGSIVETGNHEELISDSNSVYVSLVQGHPSSDPSLEQSSSIKNSGETSQTSIIGGSFRSDKDSTGHACDDEAESIEKVKPVSLIRLYSMIGPYWSYGVFGTLAAFVTGALMPLFALGISHALVSYYMDWDSTQHEVKKIAFLFCGAAILAITAYSIEHLSFGIMGERLTLRVREIMLSAILKNEIGWFDDTRNTSTVLSSRLESDATLLKTIVVDRSTILLQNVGLVVTAFIIAFILNWRITLVVLATYPLIISGHIGEKLFMQGFGGNLSKAYLKANMLAGEAVSNIRTVAAFCAEEKIIDLYLNELVEPSKRSFKRGQIAGIFYGISQFFIFSSYGVALWYGSVLIEKELSSFKSIMKSFMVLIVTALAMGETLALAPDLLKGNQMVSSIFDMIDRKSGVLDDIGEDLMTVEGTIELRKINFSYPSRPNIVIFDNFNLMVPSGKSLALVGHSGSGKSSIISLILRFYDPTSGKVMIDGKDIKEMNLKSLRKHIGLVQQEPALFATSIYKNILYGKEDASESEVIEAAKLANAHNFISALPEGYSTKAGERGVQLSGGQKQRVAIARAILRNPEILLLDEATSALDVESERVVQQALDKLMQDRTTVIVAHRLSTIRNADQISVLQDGKIIEQGTHASLIENIDGAYFKLASLQQQTAT 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01878 1089 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 222 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa4g01878 1089 MobiDBLite consensus disorder prediction 456 500 - -
Vifa4g01878 1089 CDD ABC_6TM_Pgp_ABCB1_D1_like 1 228 - -
Vifa4g01878 1089 ProSitePatterns ABC transporters family signature. 358 372 IPR017871 GO:0005524|GO:0016887
Vifa4g01878 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 454 IPR027417 -
Vifa4g01878 1089 Pfam ABC transporter transmembrane region 528 799 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa4g01878 1089 Pfam ABC transporter transmembrane region 1 206 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa4g01878 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 840 1084 IPR027417 -
Vifa4g01878 1089 SUPERFAMILY ABC transporter transmembrane region 2 227 IPR036640 GO:0005524|GO:0016020
Vifa4g01878 1089 SUPERFAMILY ABC transporter transmembrane region 514 828 IPR036640 GO:0005524|GO:0016020
Vifa4g01878 1089 Gene3D - 837 1089 IPR027417 -
Vifa4g01878 1089 CDD ABC_6TM_Pgp_ABCB1_D2_like 516 829 - -
Vifa4g01878 1089 FunFam ABC transporter B family member 19 836 1085 - -
Vifa4g01878 1089 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 846 1082 IPR003439 GO:0005524
Vifa4g01878 1089 Pfam ABC transporter 865 1013 IPR003439 GO:0005524
Vifa4g01878 1089 PANTHER ABC TRANSPORTER B FAMILY 496 1083 IPR039421 -
Vifa4g01878 1089 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 527 813 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa4g01878 1089 CDD ABC_MTABC3_MDL1_MDL2 227 455 - -
Vifa4g01878 1089 FunFam ABC transporter B family member 1 215 458 - -
Vifa4g01878 1089 ProSitePatterns ABC transporters family signature. 985 999 IPR017871 GO:0005524|GO:0016887
Vifa4g01878 1089 MobiDBLite consensus disorder prediction 456 487 - -
Vifa4g01878 1089 Gene3D ABC transporter type 1, transmembrane domain 476 822 IPR036640 GO:0005524|GO:0016020
Vifa4g01878 1089 Gene3D ABC transporter type 1, transmembrane domain 1 229 IPR036640 GO:0005524|GO:0016020
Vifa4g01878 1089 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 221 455 IPR003439 GO:0005524
Vifa4g01878 1089 SMART AAA_5 873 1065 IPR003593 GO:0016887
Vifa4g01878 1089 SMART AAA_5 246 432 IPR003593 GO:0016887
Vifa4g01878 1089 Pfam ABC transporter 238 386 IPR003439 GO:0005524
Vifa4g01878 1089 CDD ABC_MTABC3_MDL1_MDL2 846 1084 - -
Vifa4g01878 1089 Gene3D - 230 475 IPR027417 -
Vifa4g01878 1089 FunFam ABC transporter B family member 1 506 814 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01878 Vifa-Chr4 529313456 529318006 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01878 1 1089 Calmodulin-binding Proteins AT2G36910 49.136 0.0 1085