Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa4g01876 | ATGGATTACAACCGAGACGGCAACGTCGTCCAAATCATCACCGGCGGTGGCGGTGCTGACAGCTGGTCGAGTGACCAAGCAGATTGGGCGACGGAAGACGAGTATCGCTACTGGAACGGAAACGAAGCCGGCGAAACCACTCCATCCTCAAACTCCAATTGCGAGCGACAACAGCGTTCGGGGAGCGAGCCGCCGAACAAGAAATCGAGAAGCAGTTCGCAAGACGGAGGAAATGGCGGTGGATCCAATCGAGCGAAAGCGATAGGGAAGATGTTCTTCAAGACGAAACTGTGCTGCAAGTTTCGCGTGGGGACTTGTCCTTACATAACGAATTGTAACTTTGCTCACAGTGTTGAGGAGCTTCGTCGGCCGCCGGCGAATTGGCAGGAGATTGTGGCGGCGCATGAGGAAGAGAGGAACGTGCTTGAGCAGCCGAGGGAGGAGTTTCAGATTCCGACGGTGGGGTCGAGTACTTTTGTTGGGGAGAGTATGAATAATAGGTCGTATAAGGGTAGGCATTGTAAGAAGTTTTATACTGAGGAAGGTTGTCCTTATGGAGATAGTTGCACTTTTCTTCATGATGAGCAATCGAAGAATCGCGAAAGTGTTGCTATAAGTTTAGGTCCTGGTGGTTATGGTGGTGGAGGTGGTGGTGGTGGAGGTAGTTCTGGTAGTGGCGGTGGTGGTGGTAGTGGGAGTGGTGTTGTTGTTGTTGCGGCTGGTGCAGCGGCAGCTGGGAATGGGCCGAATTTGAAGCCTTCGAATTGGAAAACTAGGATTTGTAATAAGTGGGAGATGACTGGGTATTGCCCCTTTGGTAACAAATGCCATTTTGCTCATGGTGCTACAGAGTTACACAGATATGGAGGTGGGCTTATGGAAGGAGAAATCAGAGATGGTGTTTCTGTTGTTGCCTCCGACGCAAAACAGGGAGTATTTTCAAAAAATCACGCTGATAATGTGGTTGCATCAACTCCACCTATTGCTCATTCAGATGTTTATCATATTGGAGTGCCTTCACAGAGACCTTCCATTGTGAGTCAGCAGCCAGGACAGAGAGCTCATCACAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATACGGCGATTGGATCGACGACTTCGACTAG | 1131 | 0.4978 | MDYNRDGNVVQIITGGGGADSWSSDQADWATEDEYRYWNGNEAGETTPSSNSNCERQQRSGSEPPNKKSRSSSQDGGNGGGSNRAKAIGKMFFKTKLCCKFRVGTCPYITNCNFAHSVEELRRPPANWQEIVAAHEEERNVLEQPREEFQIPTVGSSTFVGESMNNRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGGGGGGGGSSGSGGGGGSGSGVVVVAAGAAAAGNGPNLKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGEIRDGVSVVASDAKQGVFSKNHADNVVASTPPIAHSDVYHIGVPSQRPSIVSQQPGQRAHHKWKGPDKISRIYGDWIDDFD | 376 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa4g01876 | 376 | Gene3D | - | 250 | 287 | - | - | |
Vifa4g01876 | 376 | Gene3D | - | 89 | 123 | - | - | |
Vifa4g01876 | 376 | SMART | c3hfinal6 | 255 | 282 | IPR000571 | GO:0046872 | |
Vifa4g01876 | 376 | SMART | c3hfinal6 | 92 | 118 | IPR000571 | GO:0046872 | |
Vifa4g01876 | 376 | SMART | c3hfinal6 | 168 | 195 | IPR000571 | GO:0046872 | |
Vifa4g01876 | 376 | ProSiteProfiles | Zinc finger C3H1-type profile. | 92 | 119 | IPR000571 | GO:0046872 | |
Vifa4g01876 | 376 | FunFam | Zinc finger, CCCH-type | 161 | 200 | - | - | |
Vifa4g01876 | 376 | ProSiteProfiles | Zinc finger C3H1-type profile. | 255 | 283 | IPR000571 | GO:0046872 | |
Vifa4g01876 | 376 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 93 | 117 | IPR000571 | GO:0046872 | |
Vifa4g01876 | 376 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 256 | 281 | IPR000571 | GO:0046872 | |
Vifa4g01876 | 376 | Gene3D | - | 160 | 207 | - | - | |
Vifa4g01876 | 376 | MobiDBLite | consensus disorder prediction | 38 | 83 | - | - | |
Vifa4g01876 | 376 | SUPERFAMILY | CCCH zinc finger | 90 | 123 | IPR036855 | GO:0046872 | |
Vifa4g01876 | 376 | Pfam | CCCH-type zinc finger | 172 | 194 | IPR041367 | - | |
Vifa4g01876 | 376 | SUPERFAMILY | CCCH zinc finger | 252 | 286 | IPR036855 | GO:0046872 | |
Vifa4g01876 | 376 | MobiDBLite | consensus disorder prediction | 42 | 80 | - | - | |
Vifa4g01876 | 376 | FunFam | Zinc finger CCCH domain-containing protein | 88 | 123 | - | - | |
Vifa4g01876 | 376 | FunFam | zinc finger CCCH domain-containing protein 15-like | 250 | 288 | - | - | |
Vifa4g01876 | 376 | SUPERFAMILY | CCCH zinc finger | 165 | 196 | IPR036855 | GO:0046872 | |
Vifa4g01876 | 376 | MobiDBLite | consensus disorder prediction | 204 | 231 | - | - | |
Vifa4g01876 | 376 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 247 | 326 | IPR045877 | GO:0003729 | |
Vifa4g01876 | 376 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Vifa4g01876 | 376 | ProSiteProfiles | Zinc finger C3H1-type profile. | 168 | 196 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa4g01876 | Vifa-Chr4 | 528176550 | 528178798 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa4g01876 | 257 | 285 | C3H Transcription Factor Family | AT1G68200 | 62.069 | 3.72e-07 | 49.7 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Vifa4g01876 | zf-CCCH | 1.2e-10 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa4g01876 | - | - | gmx:100788208 | 541.576 |