Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01876 ATGGATTACAACCGAGACGGCAACGTCGTCCAAATCATCACCGGCGGTGGCGGTGCTGACAGCTGGTCGAGTGACCAAGCAGATTGGGCGACGGAAGACGAGTATCGCTACTGGAACGGAAACGAAGCCGGCGAAACCACTCCATCCTCAAACTCCAATTGCGAGCGACAACAGCGTTCGGGGAGCGAGCCGCCGAACAAGAAATCGAGAAGCAGTTCGCAAGACGGAGGAAATGGCGGTGGATCCAATCGAGCGAAAGCGATAGGGAAGATGTTCTTCAAGACGAAACTGTGCTGCAAGTTTCGCGTGGGGACTTGTCCTTACATAACGAATTGTAACTTTGCTCACAGTGTTGAGGAGCTTCGTCGGCCGCCGGCGAATTGGCAGGAGATTGTGGCGGCGCATGAGGAAGAGAGGAACGTGCTTGAGCAGCCGAGGGAGGAGTTTCAGATTCCGACGGTGGGGTCGAGTACTTTTGTTGGGGAGAGTATGAATAATAGGTCGTATAAGGGTAGGCATTGTAAGAAGTTTTATACTGAGGAAGGTTGTCCTTATGGAGATAGTTGCACTTTTCTTCATGATGAGCAATCGAAGAATCGCGAAAGTGTTGCTATAAGTTTAGGTCCTGGTGGTTATGGTGGTGGAGGTGGTGGTGGTGGAGGTAGTTCTGGTAGTGGCGGTGGTGGTGGTAGTGGGAGTGGTGTTGTTGTTGTTGCGGCTGGTGCAGCGGCAGCTGGGAATGGGCCGAATTTGAAGCCTTCGAATTGGAAAACTAGGATTTGTAATAAGTGGGAGATGACTGGGTATTGCCCCTTTGGTAACAAATGCCATTTTGCTCATGGTGCTACAGAGTTACACAGATATGGAGGTGGGCTTATGGAAGGAGAAATCAGAGATGGTGTTTCTGTTGTTGCCTCCGACGCAAAACAGGGAGTATTTTCAAAAAATCACGCTGATAATGTGGTTGCATCAACTCCACCTATTGCTCATTCAGATGTTTATCATATTGGAGTGCCTTCACAGAGACCTTCCATTGTGAGTCAGCAGCCAGGACAGAGAGCTCATCACAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATACGGCGATTGGATCGACGACTTCGACTAG 1131 0.4978 MDYNRDGNVVQIITGGGGADSWSSDQADWATEDEYRYWNGNEAGETTPSSNSNCERQQRSGSEPPNKKSRSSSQDGGNGGGSNRAKAIGKMFFKTKLCCKFRVGTCPYITNCNFAHSVEELRRPPANWQEIVAAHEEERNVLEQPREEFQIPTVGSSTFVGESMNNRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGGGGGGGGSSGSGGGGGSGSGVVVVAAGAAAAGNGPNLKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGEIRDGVSVVASDAKQGVFSKNHADNVVASTPPIAHSDVYHIGVPSQRPSIVSQQPGQRAHHKWKGPDKISRIYGDWIDDFD 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01876 376 Gene3D - 250 287 - -
Vifa4g01876 376 Gene3D - 89 123 - -
Vifa4g01876 376 SMART c3hfinal6 255 282 IPR000571 GO:0046872
Vifa4g01876 376 SMART c3hfinal6 92 118 IPR000571 GO:0046872
Vifa4g01876 376 SMART c3hfinal6 168 195 IPR000571 GO:0046872
Vifa4g01876 376 ProSiteProfiles Zinc finger C3H1-type profile. 92 119 IPR000571 GO:0046872
Vifa4g01876 376 FunFam Zinc finger, CCCH-type 161 200 - -
Vifa4g01876 376 ProSiteProfiles Zinc finger C3H1-type profile. 255 283 IPR000571 GO:0046872
Vifa4g01876 376 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 93 117 IPR000571 GO:0046872
Vifa4g01876 376 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 256 281 IPR000571 GO:0046872
Vifa4g01876 376 Gene3D - 160 207 - -
Vifa4g01876 376 MobiDBLite consensus disorder prediction 38 83 - -
Vifa4g01876 376 SUPERFAMILY CCCH zinc finger 90 123 IPR036855 GO:0046872
Vifa4g01876 376 Pfam CCCH-type zinc finger 172 194 IPR041367 -
Vifa4g01876 376 SUPERFAMILY CCCH zinc finger 252 286 IPR036855 GO:0046872
Vifa4g01876 376 MobiDBLite consensus disorder prediction 42 80 - -
Vifa4g01876 376 FunFam Zinc finger CCCH domain-containing protein 88 123 - -
Vifa4g01876 376 FunFam zinc finger CCCH domain-containing protein 15-like 250 288 - -
Vifa4g01876 376 SUPERFAMILY CCCH zinc finger 165 196 IPR036855 GO:0046872
Vifa4g01876 376 MobiDBLite consensus disorder prediction 204 231 - -
Vifa4g01876 376 PANTHER CCCH ZINC FINGER/TIS11-RELATED 247 326 IPR045877 GO:0003729
Vifa4g01876 376 MobiDBLite consensus disorder prediction 1 25 - -
Vifa4g01876 376 ProSiteProfiles Zinc finger C3H1-type profile. 168 196 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01876 Vifa-Chr4 528176550 528178798 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01876 257 285 C3H Transcription Factor Family AT1G68200 62.069 3.72e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa4g01876 zf-CCCH 1.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01876 - - gmx:100788208 541.576