Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01869 ATGAGCTTCCAGGATATTGAATCTGGCCGACCGTTTAGACGTGGACCGATCAACGGCAAACAAGACCCGACGCAGGCAGTGGCCGCCGGTATTTTTCAGATCAATACCGCCGTATCGACTTTTCAGAGACTCGTTAATACTCTCGGAACCCCCAAAGATACCCCCGACCTTCGTGAAAAGCTTCACAAGACAAGACAACATATTGGGCAGTTGGTGAAGGATACATCAGCTAAGCTTAAACAGGCTAGTGACATTGATCACCATGCTGAAGTTAATGCAAGCAAGAAAATAGCAGATGCTAAACTTGCGAAAGATTTTCAAGCAGTGTTGAAAGAGTTTCAGAAGGCACAACGTCTTTCAGCTGAAAGGGAAACAGCTTACACTGCTTTTGTTCCACAAGCAATGCTTCCTTCTAGCTATACAGCGAGTGAAATGGATATTGGGTCTGATAAGACACCAGAACAGCGTGCCCTTCTTGTCGAATCCAGGAGGCAGGAGGTTTTATTCCTAGATAATGAGATTGCCTTCAATGAGGCAATCATTGAGGAAAGAGAGCAAGGTATTCAAGAAATACAGCAGCAAATTGGTGAAGTTAATGAAATTTTCAAAGATCTCGCTGTGCTTGTCCATGAACAAGGAACCATGATTGATGATATTGGTTCCAACATTGAGAATTCACATGCTGCAACCGCACAAGCAAAAACTCAACTTGCAAAAGCTTCAAAAACACAAAGATCAAACTCATCTTTGGCATGCTTGCTTTTGGTGATATTTGGGATTGTGCTTCTCATAGTGATCATAGTTCTTGCTGCTTAG 816 0.4301 MSFQDIESGRPFRRGPINGKQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTPDLREKLHKTRQHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLSAERETAYTAFVPQAMLPSSYTASEMDIGSDKTPEQRALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIENSHAATAQAKTQLAKASKTQRSNSSLACLLLVIFGIVLLIVIIVLAA 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01869 271 PANTHER SYNTAXIN 24 263 IPR045242 -
Vifa4g01869 271 SMART SynN_4 13 125 IPR006011 GO:0016020
Vifa4g01869 271 MobiDBLite consensus disorder prediction 1 22 - -
Vifa4g01869 271 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 178 240 IPR000727 -
Vifa4g01869 271 FunFam Syntaxin-22 like 18 131 - -
Vifa4g01869 271 SUPERFAMILY t-snare proteins 21 233 IPR010989 GO:0016020|GO:0016192
Vifa4g01869 271 CDD SynN 21 146 IPR006011 GO:0016020
Vifa4g01869 271 CDD SNARE_Qa 198 239 - -
Vifa4g01869 271 Gene3D - 172 271 - -
Vifa4g01869 271 ProSitePatterns Syntaxin / epimorphin family signature. 184 223 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vifa4g01869 271 Gene3D - 18 131 - -
Vifa4g01869 271 SMART tSNARE_6 173 240 IPR000727 -
Vifa4g01869 271 FunFam Syntaxin-22 like 171 271 - -
Vifa4g01869 271 Pfam SNARE domain 214 266 IPR000727 -
Vifa4g01869 271 Pfam Syntaxin-like protein 28 127 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01869 Vifa-Chr4 526724120 526727586 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01869 1 259 SNARE and Associated Proteins AT5G46860 76.923 1.43e-143 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01869 - - gmx:547656 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05860 1 917991779 917994519 Vifa4g01869 4 526724120 526727586 PCT