Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01868 ATGGAGCTATTTCCAGCACAACTAGATTTGTCATTGGAAATCAGTCTTCCAAACAACATACAAGCATCATCATCATCATCATCATCATCAAGATGGAGAAGAAATTCAGATGATAAAGAAGAAGAAATGGATTTGAGATTTTGGAAAAGAGCTTTGGAATCCAAATCAAACACCTTTGATCTTTCTATTACCAATCCAATGGCTTCTTCTTCTTCTACTACTACTACTACTTCAAACCACAACAATCTCATATCTCACCCTTTTCAACCGTTTCATCAAAACCAAAACAATCACCAAAGCCTAAGTGAAGAACTAGGGTTTCTAAAACCTATAAGAGGAATTCCACTTTATCAAAACCCTCCTCCTCATCCTTCTGTTGCATTATTTTCTCAACCATCCTTTGATGCTGCTTCTACTGCTAATTCTTCGATTTCAGCAACAAGTTTTCATTCTCAAAATTTCATGAGATCGAAGTTATTACCGCGGTTTCCTTCTAAACGTAGCATGAGAGCTCCAAGGATGCGTTGGACTTCCACTCTTCATAATCGCTTTGTTCATGCTGTTGAGCTTTTAGGTGGCCATGAAAGAGCTACACCAAAATCAGTTCTTGAGCTTATGGATGTAAAGGATCTAACCCTATCACATGTTAAATCTCATTTACAGATGTACAGGACTGTTAAAATTACTGATAGAGCAGCATCACCAGGACAATTTGGTATATATGACAATGGTTCATCTGGAGATACTTCTGAGGATTTCATGTTTGACATAAACTCTTCAACAAGGTCTAATGATCTTCAGAGTAAGTTGCCTAGAGAAATTACTACTAATCAAGATAAAGAAAATCATGGCTTTTGGAGCATTTCTTCAAGTAACAGGGAAGCTTGGTTGCATGGTAAGCCAGTAGATTACGTTGGAAACTTGCCTTCTCTTGAGGGAATCGATCCAAAGTGTCTAAGCAATGAAAGAAATTCATCAGATGGAAGCTCTTCCTCAAACATTTCAGGAACAAGTCACAAAAATCCAAATTTGGAATTCACATTAGGCAGGTCATTTTGA 1059 0.373 MELFPAQLDLSLEISLPNNIQASSSSSSSSRWRRNSDDKEEEMDLRFWKRALESKSNTFDLSITNPMASSSSTTTTTSNHNNLISHPFQPFHQNQNNHQSLSEELGFLKPIRGIPLYQNPPPHPSVALFSQPSFDAASTANSSISATSFHSQNFMRSKLLPRFPSKRSMRAPRMRWTSTLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLSHVKSHLQMYRTVKITDRAASPGQFGIYDNGSSGDTSEDFMFDINSSTRSNDLQSKLPREITTNQDKENHGFWSISSSNREAWLHGKPVDYVGNLPSLEGIDPKCLSNERNSSDGSSSSNISGTSHKNPNLEFTLGRSF 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01868 352 NCBIfam myb-like DNA-binding domain, SHAQKYF class 172 225 IPR006447 GO:0003677
Vifa4g01868 352 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 9 351 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vifa4g01868 352 MobiDBLite consensus disorder prediction 63 100 - -
Vifa4g01868 352 MobiDBLite consensus disorder prediction 20 40 - -
Vifa4g01868 352 SUPERFAMILY Homeodomain-like 169 225 IPR009057 -
Vifa4g01868 352 Gene3D - 171 228 - -
Vifa4g01868 352 Pfam Myb-like DNA-binding domain 173 224 IPR001005 -
Vifa4g01868 352 MobiDBLite consensus disorder prediction 319 352 - -
Vifa4g01868 352 MobiDBLite consensus disorder prediction 316 352 - -
Vifa4g01868 352 FunFam Myb family transcription factor 170 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01868 Vifa-Chr4 526708586 526712307 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01868 1 349 G2-like Transcription Factor Family AT4G17695 36.957 5.45e-48 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa4g01868 Myb_DNA-binding 9.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01868 - - aprc:113868756 365.54