Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01857 ATGGGAAGAGGTAGGGTTCAGTTGAAGAGGATAGAAAACAAGATCAATCGCCAGGTTACTTTCTCTAAAAGGAGAGCTGGACTTCTCAAGAAAGCTCATGAGATCTCTGTTCTTTGTGATGCTGAAGTTGCTTTGATTGTCTTCTCCCACAAAGGAAAGCTCTTTGAATATGCCACTGATTCTTGCATGGAGAAGATTCTGGAGCGCTATGAAAGGTATTCTTATGCAGAGAGACAGCTAGTTGCAAATGATTCTGAGTCACAGGGAAATTGGACCATTGAGTATACAAGATTGAAGGCAAAGATTGATCTTTTGCAACGAAACTATAGGCATTACATGGGAGAAGATTTGGGTACAATGAGCCTCAAAGAGCTCCAGAGTCTGGAACAACAGTTAGATACTGCTCTCAAACTCATTCGTACACGCAGAAACCAACTCATGTACGAGTCAATTTCAGAGCTTCAGAAAAAGGAGAAAGTGATTCAAGAGCAGAATAACATGCTGGCAAAAAAGATCAAGGAGAAAGAAAAGATTGCAGCTGAGCAGCAGGCACAATGGGAGCACCCAAACCATCATGGAGTCAATCCAAATTACTTACTACACCAGCAACTTCCAAGTTTGAACATGGGTGGTAATTACCGTGAGGAAGCACAAGAAATGGGGAGGAATGAGCTTGACCTGACCCTGGAACCATTGTATACCTGTCACCTTGGATGCTTTTGA 723 0.4246 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERYERYSYAERQLVANDSESQGNWTIEYTRLKAKIDLLQRNYRHYMGEDLGTMSLKELQSLEQQLDTALKLIRTRRNQLMYESISELQKKEKVIQEQNNMLAKKIKEKEKIAAEQQAQWEHPNHHGVNPNYLLHQQLPSLNMGGNYREEAQEMGRNELDLTLEPLYTCHLGCF 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01857 240 Coils Coil 125 145 - -
Vifa4g01857 240 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Vifa4g01857 240 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Vifa4g01857 240 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Vifa4g01857 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vifa4g01857 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vifa4g01857 240 Coils Coil 151 185 - -
Vifa4g01857 240 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa4g01857 240 FunFam Floral homeotic protein APETALA 1 13 68 - -
Vifa4g01857 240 Coils Coil 95 115 - -
Vifa4g01857 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa4g01857 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa4g01857 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 187 - -
Vifa4g01857 240 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa4g01857 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa4g01857 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa4g01857 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01857 Vifa-Chr4 525588171 525593130 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01857 1 240 MADS-box Gene Family AT1G26310 66.535 4.81e-111 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa4g01857 K-box 6.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01857 K09264 - gmx:100810129 414.075