Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01836 ATGAGTGAGAGAGAAGAGTTTGAGGTGGATGGAAAAAAGGGTCCTTTGGATTGGAGGTTTGTGAGTGCTAACATTACAAATTCATCTATGGGTTTGGTTTCTATGGAAAATTCTATGATGGGTTGTTCTCCTTCATGTTCTAATTCAATGGTGAATTCATATAGTCCTAACTTTTTAGACCTTGCTTCCAATTCTGAAAGCTTTGGTTTTTGTGATCTTAATGACCGTAGTAATGGAAATGGAAAAGATGGGTTAAGTTTTGAAAGAGTTGGTTGTGAAATTGATGATGGTAGAACACTAGGATTTGGATGGAACCTTGCTGGTTCTGTGATGGATAAGGGTTGTGTTTTACCTAATGGACATGACATGTTTCCTCAAAGTTTGTCTCAGTTTCCAACTGATTCTGAGTTTATTGATGCTGCGAGAATGTCTTGCTTTAGTGCCAGGGGTTTTGGAGATATGGTTAACTCGTGTAGGATTCCTCAATCCATGGCTCTACATGTGTCTCAGTTTGTTGAGCATACTGGTAGTGATGGAAGTCCACTCCTGAATGATGGAAGAAGTGATTGTCCTGTGATGTCTCCAGATGAACGGAAGCAAGCACTTGGAGGGTCTTGTAATGAAGTTGATAGAGCTGAATCAGGCGGTGAGGGTGATGATGGTGTTGCCGTTGGTAGCCATGATGGTTCCCAAATGTTGGATTGTACAAGTGGAGAACCTTCTATTAAAGGTCTAAACCCAAAGAAAAGGAAAAGAAGTAAGCAGGATGGTGATAGTGATAAAGCCATTGAAACTTCTGAGTTACCAAGAGAAACTGCAAAGGAGAGTAGACAGAAGGGAGAACAGCAACCAACTTCAAAAACCAAAGCTTATGGGAAGAATGCCAAACAGGGGTCTCAAGCCTCTGATTCGCCTAACGAGGGATACATACATGTTAGGGCTCGCCGTGGTCAAGCAACGAATAGTCATAGCCTTGCAGAGAGAGTGAGGAGAGAAAAGATCAGTGAAAGGATGAAGTTTCTTCAAGATCTTGTACCTGGATGTAGCAAGGTCACTGGCAAGGCATTGATGCTAGATGAAATCATAAACTATGTACAGTCTCTTCAACAACAAGTTGAGTTTTTATCAATGAAACTCGCAACAGTGAATCCACACGTGGATTTTAATATAGAACGACTGCTTCCTAAAGAGATTCCTCAACATCGACCTGTTCCGTCACCTGCACTGGGGTTTCTCACAGAAATGCCAGTGACTTTTCCTCCATTATTACATCCATCTCAACCAGTACTGATTCGCTCGTCTCTACCTAACATGGCTAATTCATCAGATATACTTGGGCCGGCCGTGGAACCACAATTCACACCCTCGACTGGAGAATTTAAAGAGCCAGATCAGGTCAATCCATTGCAAGAAGCCAAGCACTGA 1425 0.4218 MSEREEFEVDGKKGPLDWRFVSANITNSSMGLVSMENSMMGCSPSCSNSMVNSYSPNFLDLASNSESFGFCDLNDRSNGNGKDGLSFERVGCEIDDGRTLGFGWNLAGSVMDKGCVLPNGHDMFPQSLSQFPTDSEFIDAARMSCFSARGFGDMVNSCRIPQSMALHVSQFVEHTGSDGSPLLNDGRSDCPVMSPDERKQALGGSCNEVDRAESGGEGDDGVAVGSHDGSQMLDCTSGEPSIKGLNPKKRKRSKQDGDSDKAIETSELPRETAKESRQKGEQQPTSKTKAYGKNAKQGSQASDSPNEGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKALMLDEIINYVQSLQQQVEFLSMKLATVNPHVDFNIERLLPKEIPQHRPVPSPALGFLTEMPVTFPPLLHPSQPVLIRSSLPNMANSSDILGPAVEPQFTPSTGEFKEPDQVNPLQEAKH 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01836 474 FunFam Basic helix-loop-helix transcription factor 315 387 - -
Vifa4g01836 474 Pfam Helix-loop-helix DNA-binding domain 321 369 IPR011598 GO:0046983
Vifa4g01836 474 CDD bHLH_AtBPE_like 308 393 - -
Vifa4g01836 474 Gene3D - 315 387 IPR036638 GO:0046983
Vifa4g01836 474 SMART finulus 324 374 IPR011598 GO:0046983
Vifa4g01836 474 MobiDBLite consensus disorder prediction 283 306 - -
Vifa4g01836 474 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 316 387 IPR036638 GO:0046983
Vifa4g01836 474 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 318 368 IPR011598 GO:0046983
Vifa4g01836 474 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 225 414 IPR024097 GO:0006355
Vifa4g01836 474 MobiDBLite consensus disorder prediction 442 474 - -
Vifa4g01836 474 MobiDBLite consensus disorder prediction 251 282 - -
Vifa4g01836 474 MobiDBLite consensus disorder prediction 176 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01836 Vifa-Chr4 520040183 520042505 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01836 1 424 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 41.480 6.08e-80 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa4g01836 HLH 9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01836 - - tpra:123921399 677.937