Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01816 ATGAGTGGTATTATGGATGTTGCTGAATTACTTAGACCCTTTGTTGAGTCTAAAGCTTGGGATTACGTTGTTGTTTGGAAATATGGAAATGACCCGACTAGCTTTATTGAGTGGATGGATTGTTGCTGCTGTGGAGGAAACATTGAGAATGAGAAGATCAAAGAGGAAATAGCTGAAAAATATCCCATTTGTAGGGATACCCTCTTTCCTCATCCAGTTAGAACAAAGACTTGTGAGGCTCTTGCAAAGCTTCCTTTTGCAATGTCTCTTTATTCTAGTGTCCATGGAGAGGCTGCAATTTCACAACAACCAAGATGGCTTATCCAGGAGGACTCAATTGGAACTCAAGTTTTGATTCCTATTTTAGGAGGTCTTGTTGAGCTCTTCACTTCAATGCTGATCCCAAAAGATATAAACATCATAGAGTTCATATCAGCACACTGTTGGGTCTCTATAAAGCAAGAGGCCATATCTGCACAGAGCTACACCAGCACGAACTTCAATGAGCATTATTACCCTTTAACTCCCGGTTTATCTACAGAAAACCATAGCAGCTCTAATCCTAGCATTGAAGGACCCTCCAATGAATCTAATCCTTCAACAGAACATTTATCATTTGATTCAAAGTTTGATTGCTTGGTTCCACATGAATATACAAATCAACCAGTTGAAATATCTCTTATATCAAATATTAAAAGCCAAGGATACAATAAAACTTTGAGTTTCCATTGTGGAAATGGCGAAGAAGATAAAGAAGAAACTTTTAAGGAAACTCAAAAGGAAATGTTTCATGCTAAAAATCTTATCACGGAGAGGAATAGGAGGAACAAAATTAAAAAGGGGCTTTTTACTCTAAGGTCTCTAGTCCCTAATATAACCAAGATGGATAGAGCAGCAATTGTGGGTGATGCAATTGAATACATAAAGGAATTGCAGAGGCAGAAGATAGAACTTCAAGAAAAGGTTGATGTTTTAGATGTTGAGGATTGTAAAAAGAACACACTACAAATGAGGGTGCAAGGAGACAAAGAAAAACCTCCCAGTGAGCTTAATCAAAGTTCTTCTGATTCCGTTAGAAAGACACAGATGAAGTTGCAAGTAGAAGTGAATCATGTTCGCAGAACAGAATTCTTGATCAAGTTGTGCTGTGAAATGAAGCAAGGTGGGTTTTCAAAGTTGATAGAAGCTGTAGATTCATTTGGACTGCATGTGGTAAATGCAAACATGACCCCATTTGATGACAAAGTCCTGATCATGTTATTGGTTGAGGCAACTGCCGATGATATTCACCCAACAAAACTCAGAGAGTATTTGATACAGAAAACAAGTTGA 1332 0.3791 MSGIMDVAELLRPFVESKAWDYVVVWKYGNDPTSFIEWMDCCCCGGNIENEKIKEEIAEKYPICRDTLFPHPVRTKTCEALAKLPFAMSLYSSVHGEAAISQQPRWLIQEDSIGTQVLIPILGGLVELFTSMLIPKDINIIEFISAHCWVSIKQEAISAQSYTSTNFNEHYYPLTPGLSTENHSSSNPSIEGPSNESNPSTEHLSFDSKFDCLVPHEYTNQPVEISLISNIKSQGYNKTLSFHCGNGEEDKEETFKETQKEMFHAKNLITERNRRNKIKKGLFTLRSLVPNITKMDRAAIVGDAIEYIKELQRQKIELQEKVDVLDVEDCKKNTLQMRVQGDKEKPPSELNQSSSDSVRKTQMKLQVEVNHVRRTEFLIKLCCEMKQGGFSKLIEAVDSFGLHVVNANMTPFDDKVLIMLLVEATADDIHPTKLREYLIQKTS 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01816 443 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 265 325 IPR036638 GO:0046983
Vifa4g01816 443 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 145 IPR025610 -
Vifa4g01816 443 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 177 435 - -
Vifa4g01816 443 Coils Coil 301 328 - -
Vifa4g01816 443 MobiDBLite consensus disorder prediction 178 204 - -
Vifa4g01816 443 MobiDBLite consensus disorder prediction 337 359 - -
Vifa4g01816 443 Gene3D - 250 328 IPR036638 GO:0046983
Vifa4g01816 443 Pfam Helix-loop-helix DNA-binding domain 269 312 IPR011598 GO:0046983
Vifa4g01816 443 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 262 311 IPR011598 GO:0046983
Vifa4g01816 443 SMART finulus 268 317 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01816 Vifa-Chr4 514028153 514030534 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01816 2 442 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 29.862 3.29e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa4g01816 bHLH-MYC_N 9.5e-16 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01816 - - psat:127075085 752.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01816 4 514028153 514030534 Vifa4g01816 4 514028153 514030534 ECH