Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01814 ATGGCTCAAAAACACCACAAAAACAAAAAAAAACCTCCATCAATTTCAACTCTCAGTGATACCGAGAATCAATTAAACAAGTTAAATCATGTTAATGATAAAGATTCAGCTCCGCCGCCCGAACCCGATCCTCCGAAAATTTCACCGAAAAACTCCACCGCGGATTCCACACCGCCGCAGCCTCGGCCGAAGTCACCTTTCCCGCCAAAAGTTTTACCGCCATTAGAATCACCTTCAGAACCAGCACCAGAACCACCACCAGAACCACCACCTCCAGAACCTTCACCGCCACCTCCAGAACCTTCACCTCCACCTCCAGAACCTTCACCTCCACCTCCAGAACCTTCTCCGCCACCTCCATCACAATCCCCACCGCCACCACAATTATCACCTCCGCCGGTGCACAATGCAAGTTCTTCATCTCCTCCTCGTTTATCACATAAACCACCACCACCTCCTCCGTCGCCTCCTGAGAGGCCTTCTTCATCATCTTCTTCATCTTCTCCGCCGTCTAATGATTCGCCACATAAAGCTATGCATGAAAAACCAAGAGACTCTCATTCGCATGTATCCTCGCCCGTCGAAATAGTTGCTTATACCCTTACCGGAGTTCTGGTTGTCGCCTTAGTTGTCTTCGCCGTTTTTTTCACTTTTAGGAAGAAGAAAACGAAAGGAGATGCATATGGTGGACCCTTTATGCCACCTCCTGGTACTAACTTTCAGGTTAAATCAGGTGCTGATGGACTTTACTATGTACAGCAACCTTCCATTAGAAATAACTACGTCGCGACCGCTGGAGCAAACAGCAAGAAACATATAAGACGAGCTTCCGTGGAATCTGTACAGCCCCTAAGTGCACAAATAGTTTTTAGTTATGACATGGTAAAAGAAATAACCAATGCATTTTCTAGTCAGAATGTGATAGGGGAAGGAGGATTTGGGTGTGTTTACAAGGGTAAGCTGCTGGATGGAAAAGAAGTGGCGGTCAAGCAGCTTAAGGTTGGTAGTGGGCAAGGAGATAGGGAGTTTAGGGCCGAAGTGGAGATCATTAGCCGTGTACATCATCGACATTTGGTATCGTTGGTTGGTTATTGCATTTCTGAGCAACAAAGAGTACTTATATATGAGTTTGTTCCTAATGGAAATCTTCATCATCACTTGCATGGAAGTGGAATGCCAGTGTTGGATTGGGCCAAAAGGGTGAAGATAGCTATTGGTGCTGCAAAGGGTCTGGCGTATCTGCACGAGGACTGCAGCCAAAAGATTATTCACAGAGATATTAAATCACCCAACATACTTCTGGATGATGCTTTTGAGGCACAGGTTGCAGACTTTGGGCTTGCAAGGCTAACAGATGCTGCCAATACCCATGTATCAACTAGGGTTATGGGTACCTTTGGGTACATGGCTCCAGAATATGCAACAAGTGGAAAATTAACAGATAAATCAGATGTTTTCTCATTTGGGGTTGTCCTCCTTGAGCTTGTAACAGGAAGAAAATCGATTGATGAAACCCAGCCTTTAGGAGATGAGAGTTTGGTTGAGTGGGCTCGTCCACTACTTATCCACGCCTTTATGACACGCGAGTTTGGTGAACTAGTAGATCCAAGACTAGAAAATAACTATGTAGAGAGTGAAATGTTCGGAATGATAGAGGCAGCTGCAGCTTGTGTTCGCCACTCAGCTCCTAAACGGCCTCGTATGTCTCAGGTGGTAAGAGCTTTAGACAGTGGAGACGACATATCTGATTTATCAAACGGAGTAAAATACGGTCAGAGCACTGTCTATGATTCTGGCCAGTACGACAAAGAGATCATGCTATTCAGGAGAATGGGCAACGAAAGCTACGGTGATTCTGATATAGATAAATACAGTGGAGAATCCAATCCTTCAAAAGAGAATTTGAGATCACAGCATTCATGGATGCACAGTACTTCGAGTACCGAGTCAGAGTCAAGAGCTTTCAATAAGCATCAAGGCAGGCATGAATGA 1992 0.4528 MAQKHHKNKKKPPSISTLSDTENQLNKLNHVNDKDSAPPPEPDPPKISPKNSTADSTPPQPRPKSPFPPKVLPPLESPSEPAPEPPPEPPPPEPSPPPPEPSPPPPEPSPPPPEPSPPPPSQSPPPPQLSPPPVHNASSSSPPRLSHKPPPPPPSPPERPSSSSSSSSPPSNDSPHKAMHEKPRDSHSHVSSPVEIVAYTLTGVLVVALVVFAVFFTFRKKKTKGDAYGGPFMPPPGTNFQVKSGADGLYYVQQPSIRNNYVATAGANSKKHIRRASVESVQPLSAQIVFSYDMVKEITNAFSSQNVIGEGGFGCVYKGKLLDGKEVAVKQLKVGSGQGDREFRAEVEIISRVHHRHLVSLVGYCISEQQRVLIYEFVPNGNLHHHLHGSGMPVLDWAKRVKIAIGAAKGLAYLHEDCSQKIIHRDIKSPNILLDDAFEAQVADFGLARLTDAANTHVSTRVMGTFGYMAPEYATSGKLTDKSDVFSFGVVLLELVTGRKSIDETQPLGDESLVEWARPLLIHAFMTREFGELVDPRLENNYVESEMFGMIEAAAACVRHSAPKRPRMSQVVRALDSGDDISDLSNGVKYGQSTVYDSGQYDKEIMLFRRMGNESYGDSDIDKYSGESNPSKENLRSQHSWMHSTSSTESESRAFNKHQGRHE 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01814 663 Gene3D Phosphorylase Kinase; domain 1 261 377 - -
Vifa4g01814 663 MobiDBLite consensus disorder prediction 618 663 - -
Vifa4g01814 663 MobiDBLite consensus disorder prediction 630 653 - -
Vifa4g01814 663 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 205 627 IPR047117 -
Vifa4g01814 663 FunFam proline-rich receptor-like protein kinase PERK8 378 590 - -
Vifa4g01814 663 FunFam Proline-rich receptor-like protein kinase PERK8 274 377 - -
Vifa4g01814 663 Pfam Protein tyrosine and serine/threonine kinase 305 574 IPR001245 GO:0004672|GO:0006468
Vifa4g01814 663 Gene3D Transferase(Phosphotransferase) domain 1 378 590 - -
Vifa4g01814 663 MobiDBLite consensus disorder prediction 1 189 - -
Vifa4g01814 663 MobiDBLite consensus disorder prediction 175 189 - -
Vifa4g01814 663 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
Vifa4g01814 663 CDD STKc_IRAK 308 576 - -
Vifa4g01814 663 ProSiteProfiles Protein kinase domain profile. 302 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01814 663 SUPERFAMILY Protein kinase-like (PK-like) 281 575 IPR011009 -
Vifa4g01814 663 SMART serkin_6 302 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01814 663 MobiDBLite consensus disorder prediction 59 160 - -
Vifa4g01814 663 PRINTS Proline rich extensin signature 99 124 - -
Vifa4g01814 663 PRINTS Proline rich extensin signature 79 96 - -
Vifa4g01814 663 PRINTS Proline rich extensin signature 38 59 - -
Vifa4g01814 663 PRINTS Proline rich extensin signature 62 78 - -
Vifa4g01814 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01814 Vifa-Chr4 514011120 514016918 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01814 136 627 Trihelix Transcription Factor Family AT1G70460 57.957 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vifa4g01814 PK_Tyr_Ser-Thr 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01814 - - ccaj:109806961 630.557