Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01813 ATGGCTAGAAGAACTAGAACCTATAACAACGTAGTTGTTCTTCTGTACTCTAACCTATTGATCTTCTTCGTTCCTATTGTCATCTCCCTCAGAAGCCTCACTCCAGAGAAATCCATCAACTATAACGACTACCTAGTTTCCGAAACCGGAAACTTCGAAGCAGGGTTCACCAACATAGAGAATTCACAGAACATATACTTTTGTATATGGTACAAGAATCTAAACCCAAGAACAATTGTTTGGGTAGCCAATAGAGATACACCACTGCAAAACTCAACAGGAGTATTCAATTTCAAACTCAAACTCACTGATACAGGAAATCCAGCCATAGTTGATGGCTCAGAGAACACAATTTGGTTCTCTAATGCATCAACAGTTGTAGAGAATCCGTTTCTATTGCTCTTGGACACCGGAAACATCATCGTACGAAACGGAAGTTTAAAAGACGTTTGGTGGCAAAGCTTTGATTATCCTGGTGACACTTTATTACCTGGGATGATACTTCGAACTGATAGAATCAGCGGCGCGCATAATTCTTTGATATCGTGGAAAAACACAGGTGATCCTGCAAGAGGTGAGTTTTCATATCATATAGATTCCAATGGTTTTCCTCAATTGTTTATTTCGAAGGGATCAGTGTTAGTTTATAGATTAGGCCCATGGAATGGATTTTTTTTTACTGGGATTCCTTGGGAAACACTCTATAGTTATTTCAATTTTTCTTTTGAGATAACTGAGAAACAAGTTGCATTTAAATATGAACCCTTAAACGACACGATTGTTTCGAGATACCTTATCACTCCGACCGGCTTCGTGCAACGTTACATTTGGTTATATCAGACTGAAACTTGGCAACTTTTTCTTGCTGGCCCTGGGGACCAGTGTGAGAATTATAACATCTGTGGTGCAAATTCTGATTGTAATGTGGGGAACCAAGAGGTATGCAAGTGTCTCGTTGGTTTCGCACCTAAATCGTTCAATGATACCGATGGGTGTGTTAGGAAGGTGAAACTGGATTGTGATGATAGAGACGGATTTGTTAAGTATACAAAGATGAAGTTGCCGGATACGTCTGGGTCGTGGTTTGATAAGAAAATGAATCTTGTGGAATGTGAGAAACAATGCCTGAAAAACTGCAGTTGCATAGCTTATGCAAGTTTGAATATTAAAAATGGTGGAAGTGGATGCATCATTTGGTTCAATAACATTATTGACATGAGGACCGAAATCTCTGTTGGGCAAGAGATTTACATAAGAGTGGCTGCTTCAGAATTAGGTAGTTCAACGAATAACACAAAGAAGAAAATGATAGCAGGTATTTTAGTAGGAATAGGAGTCCTTTTCTTGGGTATCATGACAGTTGGATATGTCATCTTTCTAAAGAGGAAAAAACTTCAGATATCAGCTAGGAACACAACAATAAACCATGAAGATAACATGGATCATGAGAAGGGAAGCATTGATATATCAACTTTTGATTTTTCTACCATAGCTAATGCCACGGACAACTTCTCTCCCATTAAGAAATTGGGAGAAGGTGGATATGGTCCTGTCTACAAGGGTGTACTAGCAAATGGTAGAGAGATTGCGGTCAAGCGACTTTCGATTAAATCTGTACAAGGGCCACGGGAGTTTCAAAATGAAGTTATATTGATTGCAAATCTTCAGCATAGAAATCTTGTGAAACTCATTGGTTGTTGTATTCATAATGATGAAAGAATTTTGATTTATGAATACATGCCTAACAGAAGTCTGGACAACTTTATTTTCGATCGGACTAAAAGTCAGGTATTGGATTGGAATACACGTTTTCATATTATAAGCGGTATTGCACGAGGACTTTTGTATCTTCACCAAGATTCTAGAGTAAGGATCATCCATAGAGATCTAAAAACCAGTAATATTCTTCTTGATAACGACATGAACCCAAAAATATCGGACTTTGGACTCGCTAGAGCTTTTGGTGGAGATCATGATGAGGCCAATACAGTTAGAGTAGTGGGTACTCATGGTTACATGCCTCCAGAGTATGCTGTATATGGATCTTTTTCAGTGAAGTCTGATGTCTTCAGTTTCGGTGTTATTGTTCTAGAAATCATAAGTGGGAGGAAGAGCAGAGAATTTTTCAACCCGGAACATAATCTTAACCTTATTGGACATGCTTGGAGACTGTGGAGTGAGGATAAACAATTGGAGCTGATTGATGAGTCCCTTAAAGGTTCAGTTATCATGGACGAGGCATTAAAATGTATTCACATTGGGCTGCTAAGTGTGCAAGATAGAGCAGATGATAGGCCTGAAATGTCATCTGTTGTTCTAATGATGAATGGTGAGAGAGCACTGCCTAGTCCAAGGCAGCCCGGGTTTTATCCTCACGAAGTTGTTTCTTACTCAAGCAAACAAGAATTGTCATCAACAAATGAAATTTCTATTTCATTGTTACATCCAAGATAA 2454 0.3871 MARRTRTYNNVVVLLYSNLLIFFVPIVISLRSLTPEKSINYNDYLVSETGNFEAGFTNIENSQNIYFCIWYKNLNPRTIVWVANRDTPLQNSTGVFNFKLKLTDTGNPAIVDGSENTIWFSNASTVVENPFLLLLDTGNIIVRNGSLKDVWWQSFDYPGDTLLPGMILRTDRISGAHNSLISWKNTGDPARGEFSYHIDSNGFPQLFISKGSVLVYRLGPWNGFFFTGIPWETLYSYFNFSFEITEKQVAFKYEPLNDTIVSRYLITPTGFVQRYIWLYQTETWQLFLAGPGDQCENYNICGANSDCNVGNQEVCKCLVGFAPKSFNDTDGCVRKVKLDCDDRDGFVKYTKMKLPDTSGSWFDKKMNLVECEKQCLKNCSCIAYASLNIKNGGSGCIIWFNNIIDMRTEISVGQEIYIRVAASELGSSTNNTKKKMIAGILVGIGVLFLGIMTVGYVIFLKRKKLQISARNTTINHEDNMDHEKGSIDISTFDFSTIANATDNFSPIKKLGEGGYGPVYKGVLANGREIAVKRLSIKSVQGPREFQNEVILIANLQHRNLVKLIGCCIHNDERILIYEYMPNRSLDNFIFDRTKSQVLDWNTRFHIISGIARGLLYLHQDSRVRIIHRDLKTSNILLDNDMNPKISDFGLARAFGGDHDEANTVRVVGTHGYMPPEYAVYGSFSVKSDVFSFGVIVLEIISGRKSREFFNPEHNLNLIGHAWRLWSEDKQLELIDESLKGSVIMDEALKCIHIGLLSVQDRADDRPEMSSVVLMMNGERALPSPRQPGFYPHEVVSYSSKQELSSTNEISISLLHPR 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01813 817 Pfam D-mannose binding lectin 78 184 IPR001480 -
Vifa4g01813 817 Gene3D Hepatocyte Growth Factor 337 416 - -
Vifa4g01813 817 Pfam PAN-like domain 340 406 IPR003609 -
Vifa4g01813 817 CDD B_lectin 42 158 IPR001480 -
Vifa4g01813 817 Gene3D Transferase(Phosphotransferase) domain 1 580 782 - -
Vifa4g01813 817 Gene3D - 28 155 IPR036426 -
Vifa4g01813 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 339 420 - -
Vifa4g01813 817 SMART serkin_6 504 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01813 817 ProSiteProfiles Protein kinase domain profile. 504 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01813 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 580 783 - -
Vifa4g01813 817 Pfam S-locus glycoprotein domain 216 325 IPR000858 GO:0048544
Vifa4g01813 817 SMART blect_4 36 158 IPR001480 -
Vifa4g01813 817 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 223 IPR036426 -
Vifa4g01813 817 SMART ntp_6 341 420 IPR003609 -
Vifa4g01813 817 PIRSF SRK 2 817 IPR024171 GO:0004674
Vifa4g01813 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Vifa4g01813 817 Gene3D Phosphorylase Kinase; domain 1 464 579 - -
Vifa4g01813 817 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 21 765 - -
Vifa4g01813 817 SUPERFAMILY Protein kinase-like (PK-like) 488 800 IPR011009 -
Vifa4g01813 817 CDD PAN_AP_plant 336 421 - -
Vifa4g01813 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 468 579 - -
Vifa4g01813 817 CDD STKc_IRAK 510 777 - -
Vifa4g01813 817 Pfam Protein kinase domain 506 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01813 817 ProSiteProfiles PAN/Apple domain profile. 340 421 IPR003609 -
Vifa4g01813 817 ProSiteProfiles Bulb-type lectin domain profile. 30 155 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01813 Vifa-Chr4 514004113 514007310 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01813 423 817 Receptor kinase-like Gene Family AT3G45860 48.157 4.16e-121 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa4g01813 Pkinase 4.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01813 - - gmx:106794307 966.066