Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01812 ATGGCTAGAACTAGAACCTATAACAACGTATTTGTTCTGTACACTAACTTAATGATCTTCTTCATTCCCATTGTCATCTCCCTCAGAAGCCTCACTCCAGACAAATCCATTAAATATAACGACTACCTAGATTCCGAAACTGGAAAATTCCAAGCAGGATTCTCCAGCATGGGAGATTCACAAGATATATACTTTTGTATATGGTACAAGAATCCAAACCAAAGGACAATTGTTTGGGTAGCCAATAGAGATATACCACTGCAAAACTCAACAGGAGTATTCAAACTCACTGATACAGGAAATCCCGTCATAGTTGATGGCTCAGGGAACAATATTTGGTTCTTGAATGCATCAGCAGTTGTAGAGAATCCTTTTCTATTGCTCTTGGACACCGGAAACATTGTCGTACGAAACGGAAGTGTTAATGATGTTTGGTGGCAAAGCTTTGATTATCCTAGTGATACTTTATTACCAGGGATGATACTTCAAACTAATAGAATCAGTGGAGCGCATAACTCTTTGACATCATGGAAAAACACAGGTGATCCTGGAACAGATTATGCTGATGGCTGTGTTAGGAAGGTGAAATTGGATTGTGACGATAGAGACAGATTTGTTAAGTATACAAAGAAGAAGTTGCCAGATACGTCTTCGTCATGGTTTGACGAGAAAATGAATCTTATGGAGTGTGAGAAACAATGCCGGAAAAACTGTACTTGTATAGCTTATGCGAGTTTAAATATTGAAAATGGTGGAAGTGGATGCATCATTTGGTTCAATAATATCATTGATATGAAGACAGAAATCTCTGTTGGGCAAGAGATTTACATAAGAATGGCTGCTTCAGAATTAGGTAGTTCAACTAATAACACAAAGAAGAAAATGTTAGTAGTTATTTTAATAGGAATTGGAGCCCTCTTCTTTAGTATTACAACAATTGGATATGTCATCTTTCTAAAGAGGAAAAAACTTCAGAAGTCAGGTAGGGATACAACAATTAACCATCAAGATAACATGAATTATGAGATGGAGAGCATTGACATATTAACTTTTGATTTTTCTACCATAACTAATGCTACCGATCACTTCTCCCGCGTTTACAAACTTGGAGAAGGTGGATATGGACCTGTTTACAAGGGTGTACTAGCAAATGGTAGAGAGATTGCTGTCAAGCGGCTTTCGATTAAATCTGCACAAGGGTCACAGGAATTTCAAAATGAAGTTCTATTGATTGCAAATCTTCAGCATAGAAATCTTGTGAAACTCATTGGTTGCTGTATTCATAATGATGAAAGAATATTGATTTATGAATACATGCCTAACAGAAGTTTGGACAACTTTATTTTTGATCAAACTAAAAGTCAAGTATTGAATTGGAATGCACGTTTTCATATTATAAGCGGGATTGCACGAGGACTTCTGTATCTTCACCAAGACTCTAGAGTAAGGATCATCCATAGAGATCTAAAAACCAGTAATATTCTTCTTGATAATGATATGAACCCAAAAATATCAGACTTTGGACTCGCTAGAGCTTTTGGTGGAGATCGTGCTGAGGCCAATACAGTAAGAATAGTAGGAACTCATGGTTACATGCCTCCAGAGTATGTTGTATATGGATATTTTTCAGTGAAGTCTGATGTCTTCAGTTTCGGTGTTATTGTTATGGAAATAATCAGTGGGAGGAAGAGCAGAGATTTTTTTAACCCACAACATAATCTTAACCTCATTGGACATGCATGGAGACTTTGGAGTGAGGATAAACAATTGGAGATGATAGATGAGTCCCTTAAAGATTCAGTTGTTATGGATGAGGCATTAAAATGTATTCAAATAGGACTCTTGTGTGTGCAAGATAGAGCAGATGATAGGCCTGAAATGTCATCTGTTGTTCTAATGTTGAATGGGGAGAGAGCATTGCCTAGTCCAAGGAAGCCCGGGTTTTATCCACATGAAATTGTCTCTACCTTAAACAAAGAAGAATTTTCATCAACAAATGAAATTTCCATTTCAATTTTACATCCAAGATGA 2031 0.3683 MARTRTYNNVFVLYTNLMIFFIPIVISLRSLTPDKSIKYNDYLDSETGKFQAGFSSMGDSQDIYFCIWYKNPNQRTIVWVANRDIPLQNSTGVFKLTDTGNPVIVDGSGNNIWFLNASAVVENPFLLLLDTGNIVVRNGSVNDVWWQSFDYPSDTLLPGMILQTNRISGAHNSLTSWKNTGDPGTDYADGCVRKVKLDCDDRDRFVKYTKKKLPDTSSSWFDEKMNLMECEKQCRKNCTCIAYASLNIENGGSGCIIWFNNIIDMKTEISVGQEIYIRMAASELGSSTNNTKKKMLVVILIGIGALFFSITTIGYVIFLKRKKLQKSGRDTTINHQDNMNYEMESIDILTFDFSTITNATDHFSRVYKLGEGGYGPVYKGVLANGREIAVKRLSIKSAQGSQEFQNEVLLIANLQHRNLVKLIGCCIHNDERILIYEYMPNRSLDNFIFDQTKSQVLNWNARFHIISGIARGLLYLHQDSRVRIIHRDLKTSNILLDNDMNPKISDFGLARAFGGDRAEANTVRIVGTHGYMPPEYVVYGYFSVKSDVFSFGVIVMEIISGRKSRDFFNPQHNLNLIGHAWRLWSEDKQLEMIDESLKDSVVMDEALKCIQIGLLCVQDRADDRPEMSSVVLMLNGERALPSPRKPGFYPHEIVSTLNKEEFSSTNEISISILHPR 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01812 676 SMART serkin_6 363 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01812 676 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 183 IPR036426 -
Vifa4g01812 676 Gene3D Phosphorylase Kinase; domain 1 322 438 - -
Vifa4g01812 676 CDD STKc_IRAK 369 636 - -
Vifa4g01812 676 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 439 642 - -
Vifa4g01812 676 CDD B_lectin 34 152 IPR001480 -
Vifa4g01812 676 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 118 659 - -
Vifa4g01812 676 SMART ntp_6 200 279 IPR003609 -
Vifa4g01812 676 Pfam D-mannose binding lectin 76 178 IPR001480 -
Vifa4g01812 676 ProSiteProfiles Bulb-type lectin domain profile. 28 149 IPR001480 -
Vifa4g01812 676 ProSiteProfiles PAN/Apple domain profile. 199 280 IPR003609 -
Vifa4g01812 676 Gene3D - 26 149 IPR036426 -
Vifa4g01812 676 SUPERFAMILY Protein kinase-like (PK-like) 348 663 IPR011009 -
Vifa4g01812 676 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 327 438 - -
Vifa4g01812 676 Pfam PAN-like domain 199 265 IPR003609 -
Vifa4g01812 676 CDD PAN_AP_plant 195 280 - -
Vifa4g01812 676 Gene3D Hepatocyte Growth Factor 196 276 - -
Vifa4g01812 676 ProSiteProfiles Protein kinase domain profile. 363 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01812 676 Gene3D Transferase(Phosphotransferase) domain 1 439 641 - -
Vifa4g01812 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 484 496 IPR008271 GO:0004672|GO:0006468
Vifa4g01812 676 SMART blect_4 34 152 IPR001480 -
Vifa4g01812 676 Pfam Protein kinase domain 365 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01812 Vifa-Chr4 513988457 513992296 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01812 280 676 Receptor kinase-like Gene Family AT4G23220 46.875 1.33e-123 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa4g01812 Pkinase 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01812 - - gmx:106794307 627.476