Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01808 ATGCAAGCAATGGGGTTATCAGTAGCAGTTTCAGTTCCATTTTACCATTCCAGATTATGCATCAATGCCTCTCCTCATCCACCCATTCCCCTCAATTTGAATCATGGCTTTTCCAAATCACTTACATTCAGGGACAGACTAACTCGTGGGAAGAGTAGCTATGTCATTCGTTCCCAAAAGAATCGTGACGATGATGGTGATGTCGATGGATTTTACATGAGGAAAAGCGTTGAGCTCGCCAGAAAGGCTTTGGGGTGTACAAGCCCCAATCCTTTAGTTGGATGTGTTATTGTCAAAGATGGTCAAATTGTTGGCCAAGGTTTTCATCCTAAACCTGGTCAACCTCATGCTGAGGTGTTTGCTCTGAGAGATGCTGCTGATTTGGACGAGAATGCAACGTCGTATGTCACTTTAGAACCTTGTAATCATTTTGGGAGGACTCCGCCTTGCACTGAAGTTCTCATTAAAGCTAGACTTAAAAAGGTTGTTGTTGGGATGGTGGATCCAAATCCTATCGTGGCTTCCAAAGGGTTAGATAGATTGAGAGGTGCTGGAATTGAAGTTGTTGTTGGTGTTGAGGAAGAATTGTGTAAGGGCCTCAATGAGGGTTATATTCATCACATGTTGACCCAGAAGCCTCTGCTTACTTTGAGGTATTCTCTTTCTGTCAACGGAAACTTGTTGGACTCACTTGGGAATGGAGTAACTCACTCTGGTGGATACTATTCTAGGCTATTACAAGAATATGATGCAGTTATATTATCCTCTTCCTTATTCCGTGAAACTTTATCGGTCGACTCCGTACCTTCATCTCAAGAACCTGGAGCCAATCAACCCATTCGGTTTATAATGCATAGAGATTCTGGTTCTGGTTCTTCAAATCAAATTCCATTTATAATCGATAACGTTACTGATAAAATGATAATCTTTACAGATTGTATAACAACAGCTCCCGAGGAGACTCAACAAGGAATTAAAACTGTATCTGTGGATCAAATAAATCTTGATGTGATCTTGGATTATTGTAATCGTCAAGGATTGTGCAGTAGGCCAGAGAATAAGCTTGGAGATGATGAAACGTGGGATAGGGCTGAAAGTGCTCTCAAGGAGGCTTTGGATGAGTGTGGCAAAGGGAATGTGTTTGTTAAGAACTTAGCGAAATCGATAGATAATGTGGGACTGCATGATTTATTTCAAGAATATGGGAATATTTTGTCTAGCAAAATTGTCATCTCTGAAGATGGGAAGAGCAAAGGGTTTGGTTATATACAGTTTGGTTCAGAGGAGTCTGCAAATGATGCTATCCAGAAAATGAATGGCTCTACTGTGAGAGATAAGCAGATATATGTTGGGAAATTTATCAGAAAAAGTGAGCGCTCTTTGCCTGAACCTGATGCCAAATATACAAACTTTGAAGATGACTATGAAGTACTTGTAGAGCTTGGCATACCATACCACACAAGTGAAAAGGAAGATCTGATAGAGTTAAATAATATTCATGATAGAAATATCATATCTGGTCATATACTAAATCTTGGCATTGGAACCATTTTTGCCCCCAAATCTCCTAACAAGATCAAACTCAAAAACTCTGTTGTCGCTTTCAATTATGCAGGCATGGTTAAACCATCCAAGCTTTTAACATGCTTCCAGTGGGGTGCCTTGATGGTGGCAGATGGATATATCCTTCCATGTATAGCTGAAAGGGATTTACGACGATTTGCCAATTTGCGATCAACTTCGTCTGAACTTGGGTTGAACCTTCCTTTACATGAGGGATTGGAATCACCCGCTGATGGTAAACGTTCATCTGAGTCTAGCTACCGTATTGGAGATAATGGAACTTCAGGGGGGACAAATTAG 1863 0.4069 MQAMGLSVAVSVPFYHSRLCINASPHPPIPLNLNHGFSKSLTFRDRLTRGKSSYVIRSQKNRDDDGDVDGFYMRKSVELARKALGCTSPNPLVGCVIVKDGQIVGQGFHPKPGQPHAEVFALRDAADLDENATSYVTLEPCNHFGRTPPCTEVLIKARLKKVVVGMVDPNPIVASKGLDRLRGAGIEVVVGVEEELCKGLNEGYIHHMLTQKPLLTLRYSLSVNGNLLDSLGNGVTHSGGYYSRLLQEYDAVILSSSLFRETLSVDSVPSSQEPGANQPIRFIMHRDSGSGSSNQIPFIIDNVTDKMIIFTDCITTAPEETQQGIKTVSVDQINLDVILDYCNRQGLCSRPENKLGDDETWDRAESALKEALDECGKGNVFVKNLAKSIDNVGLHDLFQEYGNILSSKIVISEDGKSKGFGYIQFGSEESANDAIQKMNGSTVRDKQIYVGKFIRKSERSLPEPDAKYTNFEDDYEVLVELGIPYHTSEKEDLIELNNIHDRNIISGHILNLGIGTIFAPKSPNKIKLKNSVVAFNYAGMVKPSKLLTCFQWGALMVADGYILPCIAERDLRRFANLRSTSSELGLNLPLHEGLESPADGKRSSESSYRIGDNGTSGGTN 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01808 620 Gene3D Cytidine Deaminase, domain 2 58 207 - -
Vifa4g01808 620 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 378 455 IPR000504 GO:0003723
Vifa4g01808 620 FunFam Polyadenylate-binding protein 379 459 - -
Vifa4g01808 620 SUPERFAMILY RNA-binding domain, RBD 377 459 IPR035979 GO:0003676
Vifa4g01808 620 SUPERFAMILY Cytidine deaminase-like 69 208 IPR016193 GO:0003824
Vifa4g01808 620 CDD Riboflavin_deaminase-reductase 73 185 - -
Vifa4g01808 620 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 71 166 IPR002125 -
Vifa4g01808 620 Gene3D - 378 467 IPR012677 -
Vifa4g01808 620 SMART rrm1_1 379 451 IPR000504 GO:0003723
Vifa4g01808 620 PANTHER RNA BINDING PROTEIN 278 498 - -
Vifa4g01808 620 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 67 189 IPR002125 -
Vifa4g01808 620 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 380 448 IPR000504 GO:0003723
Vifa4g01808 620 MobiDBLite consensus disorder prediction 600 620 - -
Vifa4g01808 620 NCBIfam bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD 73 314 IPR004794 GO:0008835|GO:0009231
Vifa4g01808 620 Gene3D Dihydrofolate Reductase, subunit A 208 350 IPR024072 -
Vifa4g01808 620 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 116 154 IPR016192 GO:0008270|GO:0016787
Vifa4g01808 620 FunFam Riboflavin biosynthesis protein RibD 67 206 - -
Vifa4g01808 620 MobiDBLite consensus disorder prediction 595 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01808 Vifa-Chr4 513514959 513519396 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01808 376 471 Eukaryotic Initiation Factors Gene Family AT2G36660 53.125 3.64e-26 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01808 K11752 - gmx:100786393 436.417