Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01807 ATGTCACTCTCCACCACACCTTCTCACCTCACCATCCTTCCTTCAATTTCACCACTTTCTCGCAGATTTTCCTTCACTTTCCGGCAAAACATAAACCAAAAAACTTATCCTACGACCCTCTTGTCTTCTTCTTCAACAAAATCCACTAGATTCTTGGTGAAGTCTCAGTCTACTACTTCACCTGCTTCTTCCGAGGCTGTGAAAGTGATATCTGTCCCTTCTGAAATGAAGGCTTGGGTGTATGGAGAATATGGAGGTGTTGATGTTTTAAAATTTGATTCCAATGTTGCTGTTCCTGATGTTAAGGATGACCAGGTTCTTGTTAAAGTTTTTGCTGCTGCTCTTAACCCTGTTGATGGTAAAAGAAGGCAGGGAAAGTTTAAGGCTACTGATTCTCCTCTTCCGACTGTTCCTGGCTATGATGTGGCTGGGGTTGTAGTGAAAGTTGGTAGTGAAGTAAAGGAGTTCAAAGTAGGAGATGAAGTATATGGTGATGTAAATGAGAAAGCACTAGAAGGGCCTAAGCAGTTTGGGTCTCTAGCTGAGTACACAGCAGTTGAGGAGAAGTTGTTGGCACTAAAACCTAAGAATTTGGACTTTGCTCAAGCTGCTTCTCTTCCTCTTGCAATTGAAACTGCTCATGAAGGTTTGGAGAGGACTGGATTTTCTTCTGGTAAATCAATTATTGTTCTCAATGGTTCAGGTGGAGTTGGAAGCCTTGTAATTCAGCTAGCTAAACAAGTTTTTGGAGCTTCAAGAGTTGCTGCCACTGCAAGCACTAGAAATTTGGAGTTGTTGAAAAGCCTTGGAGCTGATTTGGCTATTGACTACACAAAGGAGAGCTTTGAAGACTTACCAGAAAAATTTGATGTAGTTTATGATGCCATAGGGCAATGTGAGAGGGCAGTGAAGGCTATAAAAGAAGGTGGAAGCGTAGTAGCATTAACTGGTGCTGTTACACCGCCTGGATTCAGATTTGTAGTAACTTCCAATGGAGCTGTTTTGAAGAAATTAAACCCTTATTTAGAGAGTGGAAAAGTGAAGCCAATTGTAGATCCAAAAGGTCCATTCACCTTTGATCAGGTTGCTGAAGCTTTCTCTTACATTGAAACAAACAAAGCTACTGGAAAGGTTGTTATATTCCCCATTCCATGA 1155 0.4139 MSLSTTPSHLTILPSISPLSRRFSFTFRQNINQKTYPTTLLSSSSTKSTRFLVKSQSTTSPASSEAVKVISVPSEMKAWVYGEYGGVDVLKFDSNVAVPDVKDDQVLVKVFAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSEVKEFKVGDEVYGDVNEKALEGPKQFGSLAEYTAVEEKLLALKPKNLDFAQAASLPLAIETAHEGLERTGFSSGKSIIVLNGSGGVGSLVIQLAKQVFGASRVAATASTRNLELLKSLGADLAIDYTKESFEDLPEKFDVVYDAIGQCERAVKAIKEGGSVVALTGAVTPPGFRFVVTSNGAVLKKLNPYLESGKVKPIVDPKGPFTFDQVAEAFSYIETNKATGKVVIFPIP 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01807 384 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 198 321 IPR036291 -
Vifa4g01807 384 SUPERFAMILY GroES-like 72 230 IPR011032 -
Vifa4g01807 384 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 67 384 IPR044626 GO:0016628
Vifa4g01807 384 Gene3D - 83 380 - -
Vifa4g01807 384 CDD MDR_like_2 76 380 - -
Vifa4g01807 384 Pfam Alcohol dehydrogenase GroES-like domain 104 166 IPR013154 -
Vifa4g01807 384 Gene3D - 217 331 - -
Vifa4g01807 384 SMART PKS_ER_names_mod 85 380 IPR020843 GO:0016491
Vifa4g01807 384 Pfam Zinc-binding dehydrogenase 269 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01807 Vifa-Chr4 513247382 513250060 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01807 131 162 Monolignol Biosynthesis Gene Families AT1G72680 59.375 9.28e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01807 K18980 - gmx:100780585 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01807 4 513247382 513250060 Vifa4g01807 4 513247382 513250060 ECH