Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01797 ATGGCTTCTTCCATCAAAATCTCTAGGCTCATTTCTCGCTCAATTTCTTCTGCATCTTCTTCTACCTTGTTCTCTCGAGGTGGGAATGGCGGTTATCGGGGTGGATTACTTGCTAAATATAGCACAGCTGCTGTTGTTGATGAACAGCCGATTAAACCGTTGGTGCAAGTAGAGCATACTGGGCTCTTAATTGATGGAAAGTTTGTTGATGCTGCTTCTGGGAAAACATTTCCAACATTGGATCCGAGGACCGGGGAAGTGATTGCTCATGTTGCGGAGGGTCACTCTGAAGATATTGATAGGGCTGTTGCAGCTGCACGCAAAGCATTCGATATAGGCCCGTGGCCTAAGATGACAGCCTATGAAAGGCAAAAGATAATGTTGCGTGCTGCTGATCTGATTGAGAAACATAACGATGAGATTGCGACACTTGAGACTTGGGATAATGGGAAGCCGTATGAACAATCTCGTCAAGTTGAAATTCCAATGTTGGTTCGCCTAATTCGGTACTATGCTGGTTGGGCAGATAAGATTCATGGTCTCACAGTTCCAGCTGACGGAGCCTATCATGTGCAGACATTGCATGAACCGATTGGTGTTGCTGGTCAGATCATTCCATGGAACTTCCCTCTTCTCATGTTTGCTTGGAAGGTCGGTCCGGCGTTGGCATGTGGCAACACTGTCGTTATGAAAACAGCCGAGCAGACACCACTGTCTGCGTTGTATACAGCAAGACTATTTCTTGAGGCTGGACTTCCTCCTGGCGTGTTGAATATAGTGTCCGGCTTCGGTCCAACGGCAGGTGCTGCTCTTGCTAGTCACATGGATGTTGATAAGGTTGCATTCACTGGTTCAACTGCAACGGGCAAAGTTATTCTTCAACTTGCAGCTCAAAGCAATCTTAAACAAGTAACTTTGGAGCTTGGCGGGAAATCTCCGTTTATTGTATGCGAAGATGCTGACGTAGATCAGGCTGTTGAGCTAGCACACTTTGCCCTATTCTTCAATCAAGGACAATGTTGCTGTGCTGGGTCTCGTACATTTGTACATGAACGTGTGTATGACGAGTTTGTCGAGAAAGCTAAGATCCGCGCTTTGAACCGTTCTGTTGGAGATCCATTCAAGTCAGGAATAGAACAAGGTCCTCAGATTGATTCAAAGCAATTTGAGAAAATATTGAGATATATTAGATCTGGTGTCGACACTGGGGCTACTCTTGAAACTGGCGGAGAAAGGCATGGCAGCAAGGGCTACTATATTCAGCCTACTGTTTTCTCAAACGTTCAGGATGACATGCTGATCGCAAAAGAAGAGATATTTGGTCCAGTACAAACCATATTAAAATTCAAGAACAATGAAGAGGTAATTCAAAGAGCAAACAATTCGAAGTATGGTCTTGCAGCAGGGATCTTCACACAAAACATAGACACTGCTAATACTTTGACAAGAGCATTGAAAGTTGGGACAGTTTGGGTGAATTGTTACGATGTATTTGATGCTACAATTCCTTTTGGTGGGTATAAGATGAGTGGACAAGGAAGAGAAAAAGGAGAATATAGTATTAAGAACTACCTGAATGTGAAAGCTGTTGTTACTCCTTTGAAGAATCCAGCATGGCTTTGA 1623 0.4412 MASSIKISRLISRSISSASSSTLFSRGGNGGYRGGLLAKYSTAAVVDEQPIKPLVQVEHTGLLIDGKFVDAASGKTFPTLDPRTGEVIAHVAEGHSEDIDRAVAAARKAFDIGPWPKMTAYERQKIMLRAADLIEKHNDEIATLETWDNGKPYEQSRQVEIPMLVRLIRYYAGWADKIHGLTVPADGAYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTVVMKTAEQTPLSALYTARLFLEAGLPPGVLNIVSGFGPTAGAALASHMDVDKVAFTGSTATGKVILQLAAQSNLKQVTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFVEKAKIRALNRSVGDPFKSGIEQGPQIDSKQFEKILRYIRSGVDTGATLETGGERHGSKGYYIQPTVFSNVQDDMLIAKEEIFGPVQTILKFKNNEEVIQRANNSKYGLAAGIFTQNIDTANTLTRALKVGTVWVNCYDVFDATIPFGGYKMSGQGREKGEYSIKNYLNVKAVVTPLKNPAWL 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01797 540 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 47 530 - -
Vifa4g01797 540 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 306 313 IPR029510 GO:0016491
Vifa4g01797 540 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 312 501 IPR016163 GO:0016620
Vifa4g01797 540 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 74 530 IPR016162 GO:0016491
Vifa4g01797 540 FunFam Mitochondrial aldehyde dehydrogenase 2 312 501 - -
Vifa4g01797 540 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 334 345 IPR016160 GO:0016491
Vifa4g01797 540 Pfam Aldehyde dehydrogenase family 68 530 IPR015590 GO:0016491
Vifa4g01797 540 FunFam Aldehyde dehydrogenase, putative 502 528 - -
Vifa4g01797 540 SUPERFAMILY ALDH-like 55 534 IPR016161 GO:0016491
Vifa4g01797 540 CDD ALDH_F2BC 57 532 - -
Vifa4g01797 540 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 64 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01797 Vifa-Chr4 509817292 509820549 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01797 6 540 Aldehyde Dehydrogenase Gene Family AT3G48000 75.701 0.0 870
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01797 K00128 - gmx:100777399 909.827