Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01796 ATGGCTTCTTCATTGAGGATCTCAAGGTTCATCTCTAGATCAGTTTTTTCTTCTTCATTGTTCTCTCGAGGTTTGAGTAGAGTCTGTAAATATAGCAGCGATGCTTCTTCCATCGAAGAACCAATCAAACCAACGTTTGAAGTTGATCATACTCAGCTTTTGATTGATGGAAAATTTGTAGATTCTGCATCTGGTAAAACATTTCCAACGTTGGATCCAAGAAATGGCCAAGTGATTGCTCATGTTGCTGAAGGTCAACATGAAGATGTTGATCGAGCTGTTGCTGCTGCACGTAAAGCATTTGATCATGGACCATGGCCTAAGATGACAGCATATGAAAGGCAAAGAATATTGTTACGAGCTGCTGATTTGCTTGAAAAGCATAATAATGAGCTTGCAACACTTGAGACATGGGATAATGGGAAGCCTTATGAACAAGCTGCTGAGATCGAAGTTCCAATGCTGACCCGCTTAATTCGGTACTATGCTGGTTGGGCAGATAAGATTCATGGTCTCACAGTTCCAGCTGATGGACCACATCAGGTGCATACATTGCATGAACCAATTGGTGTTGCTGGTCAGATCATTCCATGGAATTTTCCTCTTCTCATGTTTGGTTGGAAGGTCGGACCGGCATTGGCATGTGGCAACACTATTGTTCTAAAAACATCTGAGCAGACACCGTTGTCTGCTTTGTATGCAGCAAAACTATTTCATGAGGCAGGACTTCCCCCGGGTGTTTTGAATATAGTGTCTGGCTTTGGTCCAACAGCCGGTGCCGCTCTAGCTAGTCATATGGATGTGGATAAGATCGCTTTTACAGGTTCAACTGCTACTGGAAAAATTATCCTTGAACTAGCTGCTAAAAGCAATTTGAAGGCTGCAACTTTGGAGCTTGGTGGAAAATCTCCCTTTATTATATGTGAAGATGCTGATGTAGACCAGGCTGTTGAATTAGCACACTTCGCCTTGTTCTTCAACCAGGGACAATGTTGCTGTGCTGGCTCTCGAACGTTTGTCCATGAACGCGTGTATGATGAGTTTGTTGAGAAAGCAAAGGCCCGCGCTTTGAAACGCGTTGTTGGAGATCCATTCAAGACAGGAGTAGAGCAGGGACCTCAGATTGATTCAAAACAATTTGAGAAAATTCTCAAGTATATTAACTCTGGTGTTGAAAATGGCGCTACACTGGAAGCTGGAGGAGAAAAAATTGGCAACAAGGGCTTCTATATACAGCCAACTGTTTTCTCAAACGTTCAGGATGAAATGCTTATTGCGAAGGATGAGATTTTCGGTCCAGTGCAAACCATATTGAAATTCAAGGACATTGATGAGGTAATTCAAAGAGCGAATAACTCGCGTTTTGGCCTTGCGGCCGGGGTCTTCACGAAAAACATAGACACGGCTAATACTTTGACAAGAGCATTGAGAGTTGGATCGGTTTGGGTAAATTGCTATGATGTATTTGATGCTACAATTCCTTTTGGTGGGTATAAGATGAGTGGACAAGGAAGAGAAAAAGGAGAATATAGTCTTAAGAACTACTTGCAAGTGAAAGCTGTTGTTACTCCTTTGAAGAACCCAGCGTGGCTTTGA 1596 0.4261 MASSLRISRFISRSVFSSSLFSRGLSRVCKYSSDASSIEEPIKPTFEVDHTQLLIDGKFVDSASGKTFPTLDPRNGQVIAHVAEGQHEDVDRAVAAARKAFDHGPWPKMTAYERQRILLRAADLLEKHNNELATLETWDNGKPYEQAAEIEVPMLTRLIRYYAGWADKIHGLTVPADGPHQVHTLHEPIGVAGQIIPWNFPLLMFGWKVGPALACGNTIVLKTSEQTPLSALYAAKLFHEAGLPPGVLNIVSGFGPTAGAALASHMDVDKIAFTGSTATGKIILELAAKSNLKAATLELGGKSPFIICEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFVEKAKARALKRVVGDPFKTGVEQGPQIDSKQFEKILKYINSGVENGATLEAGGEKIGNKGFYIQPTVFSNVQDEMLIAKDEIFGPVQTILKFKDIDEVIQRANNSRFGLAAGVFTKNIDTANTLTRALRVGSVWVNCYDVFDATIPFGGYKMSGQGREKGEYSLKNYLQVKAVVTPLKNPAWL 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01796 531 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 303 492 IPR016163 GO:0016620
Vifa4g01796 531 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 55 310 - -
Vifa4g01796 531 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 65 521 IPR016162 GO:0016491
Vifa4g01796 531 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 325 336 IPR016160 GO:0016491
Vifa4g01796 531 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 35 521 - -
Vifa4g01796 531 FunFam Mitochondrial aldehyde dehydrogenase 2 303 492 - -
Vifa4g01796 531 Pfam Aldehyde dehydrogenase family 59 521 IPR015590 GO:0016491
Vifa4g01796 531 CDD ALDH_F2BC 48 523 - -
Vifa4g01796 531 FunFam Aldehyde dehydrogenase, putative 493 519 - -
Vifa4g01796 531 SUPERFAMILY ALDH-like 47 525 IPR016161 GO:0016491
Vifa4g01796 531 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 297 304 IPR029510 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01796 Vifa-Chr4 509670309 509673201 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01796 6 531 Aldehyde Dehydrogenase Gene Family AT3G48000 75.468 0.0 864
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01796 K00128 - gmx:100777399 913.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01796 4 509670309 509673201 Vifa4g01796 4 509670309 509673201 ECH