Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01782 ATGGGTAGGCTTGATTCTGTATTAAATCTTCCTTCTACGTCCTCTAAGCTAAAAGAGATTCAGGAGGAGTTTAAAGATAGGAAAGTTATTCTTGGTGTTGACGACATGGATATTTTTAAGGGTATCAATCTGAAATTTCTAGCAGTGGAACAGCTGCTTCAGCAGAATCCAGATTTGAAGGGAAAAGTGGTCCTTGTTCAAATTGTAAATCCTGCAAGGGGTTCAGGGAAGGATGTTCAGGAAGCAAAGAATGAAGCATATCTAATTGCCCAGAGAATCAATGCTACTTATGGTTCTAGTCATTATCGACCAGTCATTATCATCGATCGCCCTGTTCCTCGCTTTGAGAAGAGTGCCTATTATGCTGTAGCCGAGTGCTGCATTGTCAATGCTGTGAGAGATGGGATGAACTTAGTCCCGTACAAATATGTTGTCTGCAGACAGGGAACTGCAAAGCTGGATGAAGCACTGGGTAGACAGAGTGATTCTCCTCGTACAAGCATGCTTGTTGTGTCTGAGTTCATTGGCTGTTCACCTTCTCTGAGTGGGGCTATCAGGGTCAATCCCTGGGATATTGATGCAGTTGCGGATGCTCTGAATTTGGCTCTCACTATGAGAGATTCAGAGAAAAAGTTGCGCCATGAGAAACACTATCGTTATGTTAGTTCTCATGATGTGGCCTATTGGGCACGCAGTTTTATGCAGGATTTGGAGAGAGCCTGCAAAGATCATTACACTAAAAGGTGCTGGGGAATTGGTTTAGGCTTGGGATTCAGAGTTATTTCTCTTTCTCATGGTTTTAGGAAGCTATCCGTTGACCATATTGTATCAGCTTACAAAAGAACCAATAGAAGGGCCATCTTTCTTGATTATGATGGCACTATTGTACCACAAACTTCCATTAATAAAACCCCCAGCCCTGAAGTCATATCTGTGCTTAACGCTCTGTGTAATGATACCAAGAATATTGTGTTCATTGTTAGTGGAAGGGCAAGAGATTCTCTGAGTGACTGGTTTGCTTCATGCAAAATGCTGGGACTTGCAGCTGAACACGGGTACTTTCTAAGGTGGAATAGCGACTCCGAATGGGAAACCAGTCACTTGTCTGCAGACCTTGATTGGAAACAGATAGTGGAGCCTGTCATGCAGTCATATACAGAAGCAACTGATGGATCTAATATTGAAATTAAAGAAAGTGCTTTGGTGTGGCATCATCAAGATGCAGACCCTGATTTTGGTTCCTGCCAAGCCAAAGAATTGTTGGATCATTTGGAAAGTGTTCTTGCTAATGAACCGGCACTTGTTAAGAGAGGCCAGCATATTGTTGAAGTTAAGCCACAGGGAGTGACCAAAGGGTTGGTAGCTGAGAAAGTTCTTTTGAATATGGTTAATGGTGGTAATCCACCAGATTTCGTGATGTGCATCGGAGATGATAGGTCTGATGAAGACATGTTTGAAAGCATTTTGAGTACAGTCTCGTGCCCATCTTTACCATCCGCGCCGGAGATTTTTGCCTGCACTGTAGGAAGGAAGCCGAGCAAGGCCAAGTATTTTCTCGATGATACTGCCGATGTTGTCAGGTTGCTTCAAGGCCTTGCAGCCTCATCAAATCCAAAGCCCAAGCATCATCATGCCCAATTCCAGGTTTCTTTCGAGAGCATAGTTTCTTAG 1671 0.4339 MGRLDSVLNLPSTSSKLKEIQEEFKDRKVILGVDDMDIFKGINLKFLAVEQLLQQNPDLKGKVVLVQIVNPARGSGKDVQEAKNEAYLIAQRINATYGSSHYRPVIIIDRPVPRFEKSAYYAVAECCIVNAVRDGMNLVPYKYVVCRQGTAKLDEALGRQSDSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALNLALTMRDSEKKLRHEKHYRYVSSHDVAYWARSFMQDLERACKDHYTKRCWGIGLGLGFRVISLSHGFRKLSVDHIVSAYKRTNRRAIFLDYDGTIVPQTSINKTPSPEVISVLNALCNDTKNIVFIVSGRARDSLSDWFASCKMLGLAAEHGYFLRWNSDSEWETSHLSADLDWKQIVEPVMQSYTEATDGSNIEIKESALVWHHQDADPDFGSCQAKELLDHLESVLANEPALVKRGQHIVEVKPQGVTKGLVAEKVLLNMVNGGNPPDFVMCIGDDRSDEDMFESILSTVSCPSLPSAPEIFACTVGRKPSKAKYFLDDTADVVRLLQGLAASSNPKPKHHHAQFQVSFESIVS 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01782 556 CDD HAD_TPP 286 527 - -
Vifa4g01782 556 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 414 546 - -
Vifa4g01782 556 NCBIfam trehalose-phosphatase 283 532 IPR003337 GO:0003824|GO:0005992
Vifa4g01782 556 SUPERFAMILY HAD-like 285 533 IPR036412 -
Vifa4g01782 556 Gene3D - 284 402 IPR023214 -
Vifa4g01782 556 Gene3D - 414 548 IPR023214 -
Vifa4g01782 556 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 284 401 - -
Vifa4g01782 556 NCBIfam HAD-IIB family hydrolase 286 487 IPR006379 -
Vifa4g01782 556 Pfam Trehalose-phosphatase 288 522 IPR003337 GO:0003824|GO:0005992
Vifa4g01782 556 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 533 IPR001830 GO:0003824|GO:0005992
Vifa4g01782 556 FunFam Alpha,alpha-trehalose-phosphate synthase 7 222 - -
Vifa4g01782 556 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 3 242 - -
Vifa4g01782 556 Pfam Glycosyltransferase family 20 2 238 IPR001830 GO:0003824|GO:0005992
Vifa4g01782 556 Gene3D Glycogen Phosphorylase B; 3 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01782 Vifa-Chr4 506358853 506360727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01782 1 555 Trehalose Biosynthesis Gene Families AT1G23870 72.143 0.0 864
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01782 K16055 - gmx:100775779 1003.05