Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01774 ATGGGTGAACTGGGTGGTTTCGGTAAGTGGAGCAGAGAACAAGACATGGCATTTGAAAATGCATTGGCGAATTATCCTGAGGATGCTGTGGATCGATGGGGGAAAATTGCGGATGTTGTACCCGGGAAAAGTTTGGAAGAGATTATGCGTCACTATCAGCTTTTGGTCGAGGATGTCAGCCTCATTGAATCTGGAAATGTGCCTTTACCGTGTTATGATTCTTCTCCGGAGGGATCGACAAAGCGTGCTCGTGGAAAAGGAGCTGTCAAAAAGGGAGCTAATGGGTCGAAGTCTGATAAAGATCGACGAAAGGGCATTCCTTGGACTGAAGATGAACACAGGTTATTTCTTATAGGCTTGGAGAAGTATGGAGATGGTGACTGGCGAAGTATATCAAGGAGATGTGTGGTGACAAGGACACCTACTCAAGTCGCAAGCCATGCTCAGAAATACAAGATTCGTCAGAAATCAATGAATGAGAAGAAAGAAAGAAGAAGGCGATCCAGCATACATGATGTCACCCTTGAGAAAAATGTAGACATTCCAGGACCTCAAGTACCAATTACTGGTCAATCAAGCGATCCTGCAGCAAGTTCGGCTGGAGAATCAGCCACACAAGTTCCTCCAGCCCCAGCTACTGAAATGATTGCTGCTGCCGCACCTGCTGAAATGTTTGCTGCAGCCCCACCTGCTGAAATGTTTGTTGCAGCCCCATCTGCTGGAATCAGAACTTTAGATAATCCTCCGGCCCCACCTGCTGGAATCAGAACTATAGATAATCTTCCTGCCCCACCTGCTGGAATTTATGCTGCTCCTAGGGTCTGGCAACCTGTAGGAGGACCAGTTGTATCTGCAGATGGCACCACTCCAGTGAATCTCACTGCTTCTGGACACACGGCTTATGGTCGTGTGCCGGTTTCTGGGACAGCTATTCAAGAGGCACCAATGAACTTTAGTTCTCTGAAATATCTCATGCAACAAACATCTACTCGCATGTAA 999 0.4715 MGELGGFGKWSREQDMAFENALANYPEDAVDRWGKIADVVPGKSLEEIMRHYQLLVEDVSLIESGNVPLPCYDSSPEGSTKRARGKGAVKKGANGSKSDKDRRKGIPWTEDEHRLFLIGLEKYGDGDWRSISRRCVVTRTPTQVASHAQKYKIRQKSMNEKKERRRRSSIHDVTLEKNVDIPGPQVPITGQSSDPAASSAGESATQVPPAPATEMIAAAAPAEMFAAAPPAEMFVAAPSAGIRTLDNPPAPPAGIRTIDNLPAPPAGIYAAPRVWQPVGGPVVSADGTTPVNLTASGHTAYGRVPVSGTAIQEAPMNFSSLKYLMQQTSTRM 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01774 332 MobiDBLite consensus disorder prediction 146 209 - -
Vifa4g01774 332 ProSiteProfiles SANT domain profile. 108 156 IPR017884 -
Vifa4g01774 332 FunFam transcription factor MYB1R1 106 157 - -
Vifa4g01774 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 156 IPR017930 -
Vifa4g01774 332 MobiDBLite consensus disorder prediction 185 206 - -
Vifa4g01774 332 MobiDBLite consensus disorder prediction 153 174 - -
Vifa4g01774 332 ProSiteProfiles Myb-like domain profile. 100 152 IPR001005 -
Vifa4g01774 332 Pfam Myb-like DNA-binding domain 107 152 IPR001005 -
Vifa4g01774 332 Pfam Myb-like DNA-binding domain 8 54 IPR001005 -
Vifa4g01774 332 CDD SANT 107 152 IPR001005 -
Vifa4g01774 332 Gene3D - 106 158 - -
Vifa4g01774 332 MobiDBLite consensus disorder prediction 72 106 - -
Vifa4g01774 332 CDD SANT 9 56 IPR001005 -
Vifa4g01774 332 Gene3D - 6 69 - -
Vifa4g01774 332 SUPERFAMILY Homeodomain-like 102 157 IPR009057 -
Vifa4g01774 332 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 7 205 IPR043363 -
Vifa4g01774 332 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
Vifa4g01774 332 SUPERFAMILY Homeodomain-like 9 62 IPR009057 -
Vifa4g01774 332 NCBIfam myb-like DNA-binding domain, SHAQKYF class 104 155 IPR006447 GO:0003677
Vifa4g01774 332 FunFam Transcription factor SRM1 3 69 - -
Vifa4g01774 332 SMART sant 104 154 IPR001005 -
Vifa4g01774 332 SMART sant 6 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01774 Vifa-Chr4 503389532 503392014 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa4g01774 Myb_DNA-binding 4.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01774 - - gmx:100819797 302.367