Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01772 ATGCCATTTGGTTTGGTCTCGGCTTGGAACAAGCGGAGACGAAGCAAATCTCAAGATCATTCAGACCCATGGATTTATAAACCTGCAGAGTTTTGGCAACTTGAAGATCAAACATCACAATCTACTAATAGGATGCATGGATCATCTGTTTTCACACTCAAAGAGATGGAAGATGCAACTTGTTCATTCAGCGAAGATAATCTTGTTGGAAAAGGAGGATTCGGTAGAGTCTATAGGGGCATTTTGAAGTCAGGAGAGGTTGTAGCTATCAAGAAAATGGAATTGGCAGCAATTAAAGCGGCTGAGGGAGAGCGCGAATTTCGCGTAGAAGTGGACATATTGAGTCTACTAGACCACACAAATCTTGTTTCTTTGATAGGTTATTGTGCTGATGGAAAGCATAGATTCTTAGTTTATGAATATATGCATAATGGAAACCTGCAAGATCATTTGAATGGAATGAGGGAAAGAAAAATGGATTGGCCTCAAAGATTAAGAGTGGCATTAGGAGCTGCAAATGGCCTTGCTTATCTCCACTCAAGTTCTTGTGTTGGAATTCCTATTGTACATAGAGATTTCAAATCCACCAATATTCTTTTAGATGCTAATTTTGAAGCCAAGATATCGGATTTTGGATTTGCAAAGCTAATGCCAGAAGAACATGAAATACACGAAACTACCAAAGTACTTGGTACATTTGGCTATTTTGACCCGGAGTATACATCGACTGGAAAACTGACTCTACAAAGTCGTCGAGCTATAGATCTAAATCAAGGTCCAAATGATCAAAACCTTGTACTGCAAGTAAGGCACTTACTGAATGACCGCAAGATGCTCTGTAAGGTGATTGATCCAGAGATGGCTCGAAATTCTTATACCATTGAATCGATATTCATGTTTGCGAATCTCGCATCACAATGTGTTCGTCCTGAGAGTCATGTGAGACCTTCAATGATAGATTGTGTCAAACAAATTCAAATGATTATCTATACAAATGCAAAAGGGTTGGGAATGGTTATGCATAGTCTGAGAATGCTCTAG 1041 0.3919 MPFGLVSAWNKRRRSKSQDHSDPWIYKPAEFWQLEDQTSQSTNRMHGSSVFTLKEMEDATCSFSEDNLVGKGGFGRVYRGILKSGEVVAIKKMELAAIKAAEGEREFRVEVDILSLLDHTNLVSLIGYCADGKHRFLVYEYMHNGNLQDHLNGMRERKMDWPQRLRVALGAANGLAYLHSSSCVGIPIVHRDFKSTNILLDANFEAKISDFGFAKLMPEEHEIHETTKVLGTFGYFDPEYTSTGKLTLQSRRAIDLNQGPNDQNLVLQVRHLLNDRKMLCKVIDPEMARNSYTIESIFMFANLASQCVRPESHVRPSMIDCVKQIQMIIYTNAKGLGMVMHSLRML 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01772 346 PANTHER OS01G0750732 PROTEIN 30 330 - -
Vifa4g01772 346 ProSitePatterns Protein kinases ATP-binding region signature. 69 99 IPR017441 GO:0005524
Vifa4g01772 346 Gene3D Phosphorylase Kinase; domain 1 29 141 - -
Vifa4g01772 346 Pfam Protein kinase domain 64 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01772 346 FunFam receptor-like serine/threonine-protein kinase NCRK 142 337 - -
Vifa4g01772 346 Gene3D Transferase(Phosphotransferase) domain 1 142 334 - -
Vifa4g01772 346 ProSiteProfiles Protein kinase domain profile. 63 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01772 346 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Vifa4g01772 346 FunFam serine/threonine-protein kinase PBS1-like 31 141 - -
Vifa4g01772 346 SUPERFAMILY Protein kinase-like (PK-like) 38 331 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01772 Vifa-Chr4 503117065 503118685 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01772 46 329 Receptor kinase-like Gene Family AT3G58690 41.447 4.44e-75 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Vifa4g01772 Pkinase 6.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01772 - - gmx:100820613 601.668