Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01770 ATGAAAGCTAAGAGTGGCCTCTTTGCAGGGTCTCTTAATAGCAATGAACTTGTTATCATCCAAGAACACAATGAGCCTAAGACAGTGAAGAACTTGGATGGTCAAGTTTGCGAGATATGTGGTGATTCTGTAGGGCTTACAGTAGATGGAGATCTATTTGTAGCTTGTGAAGAGTGTGGCTTCCCTGTCTGCAGGCCATGTTATGAGTATGAAAGAAGAGAAGGCACACAAGTTTGCCCTCAATGCCATACACGATACAAGCGTATCAAAGGTAGTCCAAGAGTGGTGGGAGATGAAGATGAAGAAGATGTGGATGATATTGAACAAGAATTTAAAGTGGAAGAGGAAAAGTACATGCTTATGCATGAAGAGGATATGAATAGTAGAGATGATGATGAGAATACTAAACATAGGGAGCAGCTCTTATATTCCCAAAGTAATGGAGATTTTTGTGGTGCAAAATTAGATCAGAAGGAGAAAACAGATGAGTGGAAGTCGCAGCAAGGCAATCTGTTGATTGAAACTGATGCAGTTGATCCTGAAAAGGCCATGAAAGATGAAACTAGACAACCACTTTCAAGGAAAGTGGCAATACCTTCAGGAAAACTGAGCCCTTATAGAATGATGGTTGTGGCTAGGCTCATCCTTCTAATACTCTTCTTTGAGTACAGAATCTTCCATCCAGTACCTGAAGCAATTGGGCTATGGTTCATATCAGTATCATGTGAAATCTGGCTTGCATTATCATGGATGGTTGATCAGATTCCCAAATGGTTTCCCATTGATCGTGAAACATATCTCGACCGTCTTTCAGTCAGGTTTGAACCAGAAAACAAGCCGAATATGCTTTCTCCAATAGATTTCTTTGTAACAACGGTAGATCCAATAAAGGAACCACCTCTTGTTACAGCGAATACTATTCTTTCGATTTTGGCACTAGATTATCCTGCACGCAAAATCTCATGCTACGTTTCTGATGATGGTGCTTCCATGCTCACGTTTGAAGCTCTTCAAGAAACGGCTGAATTTGCGCAAAAATGGGTACCTTTCTGTAAACAATTCTCTGCAGAACCTCGAGCTCCCGAGAAGTACTTCTCTGAGAAGATAGACTTTTTGAAGGATAAGGTTCAAACCACATATGTAAAAGAACGCCGAACTATGAAGAGAGAATATGAAGAATTTAAGGTGAGAATAAATGCACTTGTGGCTAAATCCATGAGAGCTCCGTCCGAAGGGTGGAGTATGAAAGACGAAACCCCGTGGCCAGGAAACAATACAAAAGATCATCCAAGTATGATTCAAATCCTTCTTGGTCATAATGGTGGCGACAATGAAGGGAATGAACTTCCATCACTTGTCTACATCTCTAGAGAGAAAAGGCCTGCATTTCAACATCACACAAAAGCTGGTGCATTGAACGCACTGCTTCGTGTATCGGCAGTGTTGAGCAATGCTCCTTTTGTGCTCAACTTGGATTGTAATCATTATGTGAACAACAGCAAAGTTGTGAGAGAAGCCATGTGTTTCTTTATGGACATACAACTTGGGAATAGTATAGCTTTTGTTCAGTTTCCTCTAAGATTTGACAGCCTTGATAAGAATGATCGTTACGCCAACAAAAACACCATTTTATTTGATATTAACCTGAGGTGTCTAGATGGAATTCAAGGACCTGTTTATATTGGATCAGGTTGTATATTCAGAAGGAAAGCTTTAAATGGCTTTGAACCTCCTAAGACATCGAAACGCTCTCGAGTCGTACAAGTTCACTCAAAACAGGATGAAAATGGAGAGGATGCAAGCATTATAGAAGCAATCGAGGAAGACAAGCAACTATTGCAAACGGATATGAACACTGAAGATAAATTTGGAAAGTCTACACTCTTCATGAATTCTTCATTAACAGAAGAAGGCGGCGTAGATCCTTCTTCCACCCAAGAAGCCTTGCTTAAAGAAGCCATTCATGTCATGAGTTGTAGCTACGAAGACAGAACTCTTTGGGGATACGAGGTTGGTATGAGCTATGGGTCTATAGCAGCCGACACTCTAACAAGTTTGAAAATGCATACTCGCGGTTGGAGATCGGTATACTGCATGCCAAAGAGAGCTGCATTTAGGGGAACAGCACCAATCAATCTCACAGAAAGACTTAATCAAGTTCTTAGATGGGCAGTAGGATCACTTGAAATCCTATTCAGCCACCACTGTCCATTGTGGTACGGTTTTAAAGAAGGAAGACTCAAGGTTCTCCAGAGGATTGCCTATATTAACAGCACTGTCTACCCTTTTAGTGCATTACCTCTCATCATCTATTGTATCATTCCGGCCGTCTGCTTGCTTACAGATAAATTCATCACACCGTCGGTAGGAACTTTCGCAAGTCTAGTATTCATTTCTCTATTCATCTCAATCTTTGCCTCGGCTATTCTTGAATTGAGATGGAGTGGAGTTAGTCTCGAGGAATGGTGGAGAAATCAACAGTTTTGGGTGATTGGAAGTGTATCAGCACACCTTTTTGCAATCGCGCAACGCCTAATGGGAGGCTTCCTCGGAAATATTAACGCACATTTCAGCATTGTATCGAAGGCACCAGATGATGACGGGCAGTTTAACGAGCTCTACACTATTAGATGGACAGCACTACTAATACCTCCAACAACAGTCACAATAATCAACCTTATTGGCATTGTGGCCGGTTTCACGGATGCTATAAATAGTGGTGAACATGAATGGGGACCATTGATTGGGAAACTGTTCTTTTCTTCATGGGTTATTGCTCATCTTTATCCTTTTCTTAAAGGACTAATGGGGAGACAGAATAGAACACCAACTCTTATTGTTATTTGGTCTGTGCTTTTGGCTTCTATATTCTCTTTGGTTTGGGTGAGAATTGATCCTTTTGTGTTGAAAACTAAGGGGCCTGATGTTAAACAGTGTGGAATTAGTTGTTGA 2952 0.4109 MKAKSGLFAGSLNSNELVIIQEHNEPKTVKNLDGQVCEICGDSVGLTVDGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVVGDEDEEDVDDIEQEFKVEEEKYMLMHEEDMNSRDDDENTKHREQLLYSQSNGDFCGAKLDQKEKTDEWKSQQGNLLIETDAVDPEKAMKDETRQPLSRKVAIPSGKLSPYRMMVVARLILLILFFEYRIFHPVPEAIGLWFISVSCEIWLALSWMVDQIPKWFPIDRETYLDRLSVRFEPENKPNMLSPIDFFVTTVDPIKEPPLVTANTILSILALDYPARKISCYVSDDGASMLTFEALQETAEFAQKWVPFCKQFSAEPRAPEKYFSEKIDFLKDKVQTTYVKERRTMKREYEEFKVRINALVAKSMRAPSEGWSMKDETPWPGNNTKDHPSMIQILLGHNGGDNEGNELPSLVYISREKRPAFQHHTKAGALNALLRVSAVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQLGNSIAFVQFPLRFDSLDKNDRYANKNTILFDINLRCLDGIQGPVYIGSGCIFRRKALNGFEPPKTSKRSRVVQVHSKQDENGEDASIIEAIEEDKQLLQTDMNTEDKFGKSTLFMNSSLTEEGGVDPSSTQEALLKEAIHVMSCSYEDRTLWGYEVGMSYGSIAADTLTSLKMHTRGWRSVYCMPKRAAFRGTAPINLTERLNQVLRWAVGSLEILFSHHCPLWYGFKEGRLKVLQRIAYINSTVYPFSALPLIIYCIIPAVCLLTDKFITPSVGTFASLVFISLFISIFASAILELRWSGVSLEEWWRNQQFWVIGSVSAHLFAIAQRLMGGFLGNINAHFSIVSKAPDDDGQFNELYTIRWTALLIPPTTVTIINLIGIVAGFTDAINSGEHEWGPLIGKLFFSSWVIAHLYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRIDPFVLKTKGPDVKQCGISC 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01770 983 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Vifa4g01770 983 SUPERFAMILY RING/U-box 22 105 - -
Vifa4g01770 983 Coils Coil 97 117 - -
Vifa4g01770 983 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Vifa4g01770 983 FunFam Cellulose synthase 19 110 - -
Vifa4g01770 983 SUPERFAMILY Nucleotide-diphospho-sugar transferases 298 778 IPR029044 -
Vifa4g01770 983 CDD mRING-HC-C4C4_CesA 35 85 - -
Vifa4g01770 983 Pfam Cellulose synthase 286 977 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vifa4g01770 983 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 188 950 - -
Vifa4g01770 983 Coils Coil 384 404 - -
Vifa4g01770 983 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 427 579 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01770 Vifa-Chr4 503000625 503005310 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01770 1 983 Cell Wall Biosynthesis AT5G17420 63.822 0.0 1373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01770 K10999 - gmx:100777270 1613.59