Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01758 ATGAATGTTACTCGTTCTGCTCTGAAGCTCCGTCTTCAAACCTCACCAATCCGCTACCAATTCTTCTTCTCACGCTTCAACAATGCTCTTCGCAATCCCAATTCGCATTCTTCTCCTTTCAATTTCAAACCAAAGCGCTTCTTTTCTCTAACCCATCCACGCCAAACGCAGACACAACCCTTTGTGGGAAGCGCGGCTTCGTCAAGCTCTTCAGAAGATTCCAGAGGCCGTGACTTTTTCTTTGCTGAAGAAAACGTTTCGTGGAGTTCACTTGGCTTATCTGATACAATCTCTGGTGCTCTCTCTAATATTGGTCTTAAAACACCATCTCTTGTTCAGGCTTCTTCTATACCACCTGTTTTGTCAGGGAAGGATGTAATTATTGCTGCGGAGACCGGAAGTGGCAAGACATACAGTTATCTACTTCCTCTCATTGATAAGCTGAGGGATGCACAGGAACAATCTCTGGATGTTGTATCTGACAAAGAAATCTATCCACCGGCCGGGAAAGTTCTACTTGTACTTTGTCCGAATGTGCAACTGTGTGAGCAGGTAGTTAAGATGGCTAATAGTCTCTGTAGCGACAATGGTGGAACCATTGTTAATGCGGCATCCATTTGTGGAAGACAGGGATGGCCGATTCGGGAACCTGATATCATTGTGACGACACCCGCTGCTCTTCTCAATCATGTTGACGTTGATAGAAGGCGGCGCATGGAATTTATGCATGGTGTCAAACATGTGGTGTTTGATGAAGCTGATATGCTTCTTTGTGGAAGCTTCCAGAATAAAGTAATCCGCCTGATTCAATTGCTCCGCTATGATGAAAAACTCTTGTCTCGATCAAAAACACCAGTATCAGAGTTGGCAATGAAACTGGAGGAATCTTCTTTGTTGCCGGACGATGCTTTGGAAGGTGAAGACGAATTTCCACCTGAAATCATCTCAGACGAGGAGGATGAGGATGATGATAAAGAGGATATTGTCATTATTAATAACGAAGCTGAATCTGTTAAGAGAACAAGAAGAGAGTGGAGGAGAGTGAGGAAACATTATGAGCGTAGTAAGCAGTATGTTTTTGTTGCAGCTACACTGCCAGTGAATGGAAAGAAAACTGCTGGAGCATTATTAAAACACATGTTTCCTGATGCTGAGTGGGTTAGTGGAAACTATCTTCATCGTCACAATCCAAGATTGAAGCAAAGATGGATAGAAGTGAGCGTTGATACACAGGTGAAAGAACTCATAAAGGCTGTGAATCATGGTTTAGAATCTGAAGATTTGGATAGTGACAGTGGTGTTCGTAGAACAATGGTGTTTGCCAACACTGTTGAGGCTGCTGAAGCTGTGGCAAAGATATTGAACTATACTGGGCTTGAATGTTTACGTTATCATAAGAATTGCTCATTGGAAGAGCGAGCACAGACATTAGTTGATTTCCACGAGAAAGGTGGTGTTCTTGTATGTACTGATGCAGCTGCTCGTGGTGTGGATATTCCAAATGTCTTGCATGTTATTCAGGCGGATTTTGCTACTTCTGCTGTAGACTTTTTGCATAGGATTGGTCGCACAGCTAGAGCTGGTCAAAACGGACTAGTTACTAGCATGTACACCGAGTCCAACAGGGAGCTTGTACAGGCAGTTCGGCAAGCAGGGGAACTCGGTCAACCTGTGGAGACCGCATTTAGCAGGAAAAGAAGCTTCCGTAACAAGCTTAAAAAGAAAGCAAATGCTGACAAAGTTAGAGATTCAGCGACTATTGAAGAGAGTGTTACAGCTTGA 1782 0.436 MNVTRSALKLRLQTSPIRYQFFFSRFNNALRNPNSHSSPFNFKPKRFFSLTHPRQTQTQPFVGSAASSSSSEDSRGRDFFFAEENVSWSSLGLSDTISGALSNIGLKTPSLVQASSIPPVLSGKDVIIAAETGSGKTYSYLLPLIDKLRDAQEQSLDVVSDKEIYPPAGKVLLVLCPNVQLCEQVVKMANSLCSDNGGTIVNAASICGRQGWPIREPDIIVTTPAALLNHVDVDRRRRMEFMHGVKHVVFDEADMLLCGSFQNKVIRLIQLLRYDEKLLSRSKTPVSELAMKLEESSLLPDDALEGEDEFPPEIISDEEDEDDDKEDIVIINNEAESVKRTRREWRRVRKHYERSKQYVFVAATLPVNGKKTAGALLKHMFPDAEWVSGNYLHRHNPRLKQRWIEVSVDTQVKELIKAVNHGLESEDLDSDSGVRRTMVFANTVEAAEAVAKILNYTGLECLRYHKNCSLEERAQTLVDFHEKGGVLVCTDAAARGVDIPNVLHVIQADFATSAVDFLHRIGRTARAGQNGLVTSMYTESNRELVQAVRQAGELGQPVETAFSRKRSFRNKLKKKANADKVRDSATIEESVTA 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01758 593 CDD DEADc 100 293 - -
Vifa4g01758 593 Gene3D - 62 381 IPR027417 -
Vifa4g01758 593 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 86 114 IPR014014 GO:0003724
Vifa4g01758 593 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 117 303 IPR014001 -
Vifa4g01758 593 CDD SF2_C_DEAD 399 537 - -
Vifa4g01758 593 SMART ultradead3 105 402 IPR014001 -
Vifa4g01758 593 MobiDBLite consensus disorder prediction 573 593 - -
Vifa4g01758 593 Pfam Helicase conserved C-terminal domain 434 528 IPR001650 -
Vifa4g01758 593 Pfam DEAD/DEAH box helicase 112 273 IPR011545 GO:0003676|GO:0005524
Vifa4g01758 593 SMART helicmild6 448 528 IPR001650 -
Vifa4g01758 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 540 IPR027417 -
Vifa4g01758 593 Gene3D - 400 593 IPR027417 -
Vifa4g01758 593 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 95 564 - -
Vifa4g01758 593 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 411 576 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01758 Vifa-Chr4 499698729 499703246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01758 342 554 Eukaryotic Initiation Factors Gene Family AT5G11170 28.182 7.64e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01758 - - gmx:100780518 810.061