Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01746 ATGACTTTCCACATGATCCTTATTTTGTGTCTTGTTTTTCACATTTTTTCAACACAAATATGTTATTGCCAAAATAATTCTCCTCAAAACATAGAAACTTTCTACCAAAATGAAACTGTAGTTTCATCACCACCAAAGGCACAACCTTCATCACCACCACCTCAAGGACTAACTGCGGTATCGAAAAGTAGTTCGTCGAACGGTAAGATAGCGAAAGCTGTGGCTGCAACTGCAGCAAGCACTATAGTTATTTGTGGTTTAATTTTCATTATAGTAAAAAGGTGTTTAAGAAAAAGAAAGAGAAACAACATTGTTTCTAATGGTGATAATAGACAACAAGTTGATGTGCCTAGAGGGAATGTTTTTGAAAAGATTGATGGAAATGTGAGAGGATTGATTGTTGATGAAGATGGTTTGGATGTGATTTATTGGAGAAAACTTGAAGAGAAGAATTCTAACAAGGATCTTTATAAGGACATAATCTCGAATAGTCCGAAAAACAAAGTTGAAGAAGATCAAGTGAAAAAATCTAAGTACATTCAAGAAACTCCTCTTCTTAAAGGACAATCTTCATCTTCACACATATTTCAAGAACAGGATGATTTATATAGAATTCCAAGAATTCAATCTCAACCATCCAAAAATGAAGAATTTTTGAAAAAGGGTGTTGAAAAACATGAATTTCAATCTCAACCATCTATTTTGCCATCCATAGTTGCACCGCCACCGCCACCGCCACCGCCTCCTCCAATGAAGGCAGCACCACCGCCACCACCTCCTCCAATGTCATCTTCGAAAGCTATCTCTAAGACCAATGAAAGAAACTCTTTAGGGAAAGGTGTGGAAGAGTCCAACAATGATCAAGTGAAGTTGAAGCCTTTGCATTGGGATAAAGTGAATACTAATGCTGCTGATCATTCCATGGTTTGGGACAAAGTCGATCGCGGTTCGTTCAGGGTTGATCAAAATCTTATGGAAGCTCTCTTTGGTTATGTTGCAACCAATCGAATGTCACCTAAAGGAAAGACTAACTCAACAAATCCAAGCAATGATGCCTCAACAAAAAAATTCCTTCTTGATCCTAGAAAATCACAAAACATTGCCATTGTTTTGAAATCACTAACCGTCTCGCGAGACGAAATTCTTGATGCGCTCATCGAAGGAAAAGGCCTAAATGGAGACACAATTGAAAAGCTTTCAAGAGTTTCACCAACAGAAGAAGAGAAATCACTTATACTTCGCTATAAAGAAGATCCATCAAGACTCGCTGCAGCAGAATCTTTCCTATATCACATCCTCATCGTCGTTCCTTCAGCGTTTAACCGCTTGAATGCGATGCTATTCAAATTGAACTATGACTCGGAAGTCTTGGAGATCAAGGATTCTTTGCAGACGATTGAATTTGGATGTAAAGAGCTTAGAAGTCAAGGACTTTTCTTGAAGCTTCTAGAAGCGGTTCTTAAGGCCGGGAATCGAATGAATGATGGAACTTCTAGAGGTAATGCTCAAGCTTTTAACTTGAATTCACTAAGGAAACTCAATGATGTGAAAAGCAACAATGGAAAAACCACATTACTTCACTTTGTTGTCGAAGAAGTTGTTCATTCGGAAGGAAAACGCGCTGTTCTTAACCGAAATAACAGCCTAACCCGAAACATGAGTCGAAAGAGAAGCATTAACATGAATGGAAACATCGAAACAAATGTTGTTTCGGACAAAAAAAGAGAAAGGGAATACACAATGTTAGGATTATCAATTGTGGGAGGAATAAGTTCTGAATTCAGCAATGTTAAAAAAGGAGCAAATTTGGATTATAAAAGTTTAGTTGAATCAATTTCATCACTATCTATGAGACTTGTTGAAATTCAAGAACTTGTTTCACAATGTGAGAGTGGTGAAAGAGGAAATTTTGTGAAAGAAATGAATTATTTTATTGGAAATGCTGAGGAAGAATTGAAACTTGTTAGGGAGAAAGAAACAATTGTGTTGCAGATTCTTTGTAAAACAACACAATATTATGAATGTGGAGATTCAAAAGAGAAAGAAAAAAACAATCTTCAACTATTTGTTATAGTTAAAGATTTTTTGGGAATGGTTGATCAAGTTTGCATTGAAATTGCACGTGACTTGCAGAAGAAGAATCTGAAAGGAATTTCTGATTAA 2163 0.3648 MTFHMILILCLVFHIFSTQICYCQNNSPQNIETFYQNETVVSSPPKAQPSSPPPQGLTAVSKSSSSNGKIAKAVAATAASTIVICGLIFIIVKRCLRKRKRNNIVSNGDNRQQVDVPRGNVFEKIDGNVRGLIVDEDGLDVIYWRKLEEKNSNKDLYKDIISNSPKNKVEEDQVKKSKYIQETPLLKGQSSSSHIFQEQDDLYRIPRIQSQPSKNEEFLKKGVEKHEFQSQPSILPSIVAPPPPPPPPPPMKAAPPPPPPPMSSSKAISKTNERNSLGKGVEESNNDQVKLKPLHWDKVNTNAADHSMVWDKVDRGSFRVDQNLMEALFGYVATNRMSPKGKTNSTNPSNDASTKKFLLDPRKSQNIAIVLKSLTVSRDEILDALIEGKGLNGDTIEKLSRVSPTEEEKSLILRYKEDPSRLAAAESFLYHILIVVPSAFNRLNAMLFKLNYDSEVLEIKDSLQTIEFGCKELRSQGLFLKLLEAVLKAGNRMNDGTSRGNAQAFNLNSLRKLNDVKSNNGKTTLLHFVVEEVVHSEGKRAVLNRNNSLTRNMSRKRSINMNGNIETNVVSDKKREREYTMLGLSIVGGISSEFSNVKKGANLDYKSLVESISSLSMRLVEIQELVSQCESGERGNFVKEMNYFIGNAEEELKLVREKETIVLQILCKTTQYYECGDSKEKEKNNLQLFVIVKDFLGMVDQVCIEIARDLQKKNLKGISD 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01746 720 SMART it6_source 281 714 IPR015425 -
Vifa4g01746 720 PANTHER FORMIN-RELATED 27 709 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vifa4g01746 720 MobiDBLite consensus disorder prediction 265 283 - -
Vifa4g01746 720 ProSiteProfiles Formin homology-2 (FH2) domain profile. 281 720 IPR015425 -
Vifa4g01746 720 MobiDBLite consensus disorder prediction 234 289 - -
Vifa4g01746 720 MobiDBLite consensus disorder prediction 42 63 - -
Vifa4g01746 720 MobiDBLite consensus disorder prediction 236 264 - -
Vifa4g01746 720 SUPERFAMILY Formin homology 2 domain (FH2 domain) 294 711 - -
Vifa4g01746 720 Gene3D Formin, FH2 domain 301 717 IPR042201 -
Vifa4g01746 720 Pfam Formin Homology 2 Domain 284 699 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01746 Vifa-Chr4 496953532 496955896 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01746 9 715 FH2 protein (formin) Gene Family AT1G70140 42.457 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01746 - - gmx:100783219 827.78