Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01743 ATGAAGAGGTCCAAAGATGATGTTTACATGAGTTCACAACTCAAACGCCCCATGCTGTCTTCTAGAGGAGAACCCTCGGGGCAACCCCAAGTGATGAGTGGTGGTCAGAAGTTAACTACAAATGATGCTTTATCGTATCTCAAGGCAGTAAGAGAAATGTTTCAAGATGATAAGGAGAAGTATGATGAGTTTTTGGAAGTCATGAAGGATTTCAAGGCCCAAAGAATTGATACAGCTGGTGTCATAGAAAGAGTGAAGGAGCTTTTTAAAGGGCATAAAGATTTAATTTTGGGATTTAACACCTTCTTGCCAAAGGGATATGCAATCACACTTCCATTGGAAGATGAACAACCTCCACAGAAGAAGCCTGTTGAATTTGAAGAAGCTATAAATTTTGTGGGCAAGATTAAGACTCGTTTTCAAGGCAATGACCGTGTTTACAAGACTTTTTTAGACATACTAAATATGTACAGAAAGGAAACCAAGTCTATCACCGTGGTTTACCAAGAGGTTTCTGCTCTCTTCCAAGACCATGCAGATCTTCTCGAGGAGTTTACTCATTTTCTTCCTGATACCTCTGGAGCAGTCTCTGCTCATTTTGCCTCTGCTCGTAATTCTCTCCGTGATAGGAGCTCTGCAATGGCAACAGCAAGGCAATTGCATGTTGACAAGAGAGAAAAGACAACAGCTTTGCATGCTGATCGTGATCTCAGCATCGATCATCCTGATCCAGAACTGGACAGAGGTGTGATGAGGGCTGATAAGGAGCATAGAAGACGCGAGAGAGAAAAGGACCGTAGAGAAGAGAGAGACAGGAGAGAACGGGATAGGGATGATAGAGATTATGATAATGACGATGAAAAGCTTGACATGCGTCCTATCTCGTCCGCTTCTGAGGATAAAAGTTCTTTGAAAAATATGTGTAGTCCAGTGCTTGCTTTCCTTGAAAAAGTCAAGGAGAAATTAAGAGGTCCTGAGGATTACCAGGAATTTTTGAAGTGCCTACATATCTACAGCAGGGAAATAATCACCCGACAAGAACTACTAGCATTGGTGGGTGATTTATTGGGAAAATATGCCGATATTATGGAGGGATTTGATGAGTTTGTGACACAATGTGAACAAAATGAAGGATTCCTTGCTGGTGTCATGAATAAAAGACATGGACAGAAACCAATGAAGGTAGAGGACAAAGACAGAGATCGTGACAGGGATGATGGGGTCAAAGAAAGGGACCGTGAACTCCGAGAAAGAGACAAATCCACTGGAATTGCCAATAAGGATGTTTCTATTCCTAAGGTGTCTTTGAGCAAGGACAAGTATGTAGGAAAACCTATAAATGAACTGGACCTTTCTAACTGTGAACAATGTACTCCTAGTTACCGTCTTCTACCAAAAAATTACCCAATACCGATAGCTAGCCAGAGAACTGAACTAGGTGATGAAGTATTGAACGATCACTGGGTTTCTGTTACATCAGGAAGTGAGGATTATTCCTTTAAACACATGCGCAAAAATCAGTATGAAGAGAGTTTGTTTAGATGCGAAGACGACAGGTTTGAACTTGATATGTTGCTAGAGTCTGTTAATGTGACAAATAAGAGAGTTGAAGAGATCTTAGAAAAAGTTAATGCTAATATAATTCCAGGAGACATCCCAATTCGTATCGAGGAGCACTTAACAGCCCTAAATCTTAGGTGCATTGAACGATTATATGGTGACCACGGGCTTGATGTGATGGATGTATTGAAAAAGAATGCATCTCTTGCTTTGCCAGTGATATTAACCCGCTTGAAGCAGAAACAGGAGGAGTGGGCAAGATGCCGCGCAGATTTTAATAAAGTTTGGGCTGAAATATATTCGAAAAATTATCACAAATCACTTGATCACCGAAGCTTTTACTTTAAGCAGCAGGATGCAAAAAGCTTGAGCACTAAAGCTTACTTACGCCACAATGAACTTGGTGGAGCTAGAGGAGAAGACGACTTCGACATAATGTTGAGGAATGAGAATCTGGTGTGGTGGATTGGGGGTGGTTGA 2040 0.4123 MKRSKDDVYMSSQLKRPMLSSRGEPSGQPQVMSGGQKLTTNDALSYLKAVREMFQDDKEKYDEFLEVMKDFKAQRIDTAGVIERVKELFKGHKDLILGFNTFLPKGYAITLPLEDEQPPQKKPVEFEEAINFVGKIKTRFQGNDRVYKTFLDILNMYRKETKSITVVYQEVSALFQDHADLLEEFTHFLPDTSGAVSAHFASARNSLRDRSSAMATARQLHVDKREKTTALHADRDLSIDHPDPELDRGVMRADKEHRRREREKDRREERDRRERDRDDRDYDNDDEKLDMRPISSASEDKSSLKNMCSPVLAFLEKVKEKLRGPEDYQEFLKCLHIYSREIITRQELLALVGDLLGKYADIMEGFDEFVTQCEQNEGFLAGVMNKRHGQKPMKVEDKDRDRDRDDGVKERDRELRERDKSTGIANKDVSIPKVSLSKDKYVGKPINELDLSNCEQCTPSYRLLPKNYPIPIASQRTELGDEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTNKRVEEILEKVNANIIPGDIPIRIEEHLTALNLRCIERLYGDHGLDVMDVLKKNASLALPVILTRLKQKQEEWARCRADFNKVWAEIYSKNYHKSLDHRSFYFKQQDAKSLSTKAYLRHNELGGARGEDDFDIMLRNENLVWWIGGG 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01743 679 ProSiteProfiles PAH domain profile. 300 373 IPR003822 GO:0006355
Vifa4g01743 679 SMART hdac_interact2seq4b 453 553 IPR013194 -
Vifa4g01743 679 FunFam Paired amphipathic helix protein SIN3 302 375 - -
Vifa4g01743 679 ProSiteProfiles PAH domain profile. 36 106 IPR003822 GO:0006355
Vifa4g01743 679 MobiDBLite consensus disorder prediction 14 36 - -
Vifa4g01743 679 FunFam Paired amphipathic helix SIN3-like protein 121 192 - -
Vifa4g01743 679 MobiDBLite consensus disorder prediction 389 421 - -
Vifa4g01743 679 Gene3D Paired amphipathic helix 303 375 IPR036600 GO:0006355
Vifa4g01743 679 MobiDBLite consensus disorder prediction 219 295 - -
Vifa4g01743 679 Pfam Paired amphipathic helix repeat 146 189 IPR003822 GO:0006355
Vifa4g01743 679 Pfam Paired amphipathic helix repeat 326 370 IPR003822 GO:0006355
Vifa4g01743 679 Pfam Paired amphipathic helix repeat 59 103 IPR003822 GO:0006355
Vifa4g01743 679 MobiDBLite consensus disorder prediction 383 421 - -
Vifa4g01743 679 FunFam Paired amphipathic helix protein Sin3 42 104 - -
Vifa4g01743 679 Gene3D Paired amphipathic helix 42 104 IPR036600 GO:0006355
Vifa4g01743 679 Gene3D Paired amphipathic helix 120 193 IPR036600 GO:0006355
Vifa4g01743 679 ProSiteProfiles PAH domain profile. 122 192 IPR003822 GO:0006355
Vifa4g01743 679 SUPERFAMILY PAH2 domain 309 373 IPR036600 GO:0006355
Vifa4g01743 679 SUPERFAMILY PAH2 domain 35 105 IPR036600 GO:0006355
Vifa4g01743 679 MobiDBLite consensus disorder prediction 1 36 - -
Vifa4g01743 679 Coils Coil 526 546 - -
Vifa4g01743 679 SUPERFAMILY PAH2 domain 118 191 IPR036600 GO:0006355
Vifa4g01743 679 MobiDBLite consensus disorder prediction 207 302 - -
Vifa4g01743 679 PANTHER SIN3B-RELATED 36 651 IPR039774 GO:0003714
Vifa4g01743 679 Pfam Sin3 family co-repressor 455 545 IPR013194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01743 Vifa-Chr4 496205282 496209980 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01743 28 118 WRKY Transcription Factor Family AT4G12020 56.383 3.23e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa4g01743 Sin3_corepress 3.3e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01743 K11644 - gmx:100781798 995.727