Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01724 ATGTCTTCATCGTCTTCTTTGTCCGGAGGAGCATTTAGGCTTCGTTGGGATGTGTTTTTGAGTTTCAGAGGTGAAGACACTCGCGAATGCTTCACCAAAAAACTATACGAATCTCTCCATGGTCAAGGAGTTCGTGCTTTCATGGACGACGAGGGTTTGGACCGTGGGGATCGTATAGATATCACTCTTCTTCAAGCTATTGATGATTCTGCTGCTTCCATTGTTATTATCTCTCGTAATTACGCTGACTCTCATTGGTGTCTCGATGAACTTGTCAGGATTTTTGAATGCAAGAGGCTTGTTATTCCCGTTTTCTACAAAGTTGATCCTTCTCATGTTAGGAAACAGTCCGGCCCTTTTCAAAAAGGTTTTACTGATCTTGAAAACAGATTTGGTAATCTTATGGTTTCCAAGTGGAGACATTCTATGAAGTTACTTGGTGGACTTGCTGGCTTTGTTTTCAATGACAGTTATGAAGGTCAGCTTGAAAATCTGATACACCTTTTGGTGAAAAGGGTTTTGAAGGAGTTAAGTAATACTCCAATGGTTGTCGCTGAGTTTCTAGTCGGACTCAATGAACGTGTTGACAAGGTCATACATCTGTTACAAGTTCAACCCAACAGCGTCAAAGTCTTAGGGTTATATGGGATGGGAGGTGTTGGTAAGACAACACTTGCCAAGGCTCTTTTCAATACTCTCGTTGCTCGCTTTGAGCGTAGATGTTTCGTTTCAAATGTGAGAAACTCCTCGTCTAAAGAGGGTGGTTTGCTTTCTCTTCAAAGCAATATCATTAAAGATCTTTCTTCTCAACAAGGAGCTCAGAGTTTTGTAAGTGATGTCAATGCCGGTATTGCTACTATCAAAAGAATAGTTCATGAAAATCCGGTTCTGCTAGTGTTGGATGATGTTGATAATGTAAGCCAGCTTGATGCTTTGATTGGTAAAAGGGAATGGTTTTATAAAGGAAGCTGTATAATCATTACAACAAGGGACACGACTGCTTTGCCTGAAAAACATGTCAACCAGATGTATGAAGTCAAAGAATTGTATGATGAAGAAGCTCTACAATTATTCAGTTACCATGCTTTGAAGAAAAAGGACCCTCCACCAAGTTTTCTGGATCTTTCAAAGAAAATTGTATCTCTTACCGGAAGAATGCCATTGGCTTTGGAAGTGTTTGGTTGCTTTCTGTGTGAGAGAAGGAGGGTGGAGGAGTGGGAGGATGCTGTTGTGAAGCTGAGAACAATTCGACCCGGGAATCTTCATGATGTGTTGAAGATAAGTTATGATGGGTTGGACGAACAAGAGAAGTGTATATTCCTTGATATTGCTTGTTTCTTTCTTCAAATGGAAATGAAGCGCGGTGATGTGATTGATATATTGAGAGGTTGTGGGTTTAGAGGAGAGATAGCTATGACCATCCTTGTACAGAAATGCTTAATCAAAATAAAACATGACAATACCTTGTGGATGCATGATCAAATTAGAGACATGGGAAGACAAATTGTTATGGATGAAAACCATGTTGATCCTGGGATGCGTAGTAGACTGTGGGATCGTGCTGAAATCATGTCCGTTTTGAAGAGTAAGAAGGGAACAAGATGCATACAAGGAATTGTACTGGACTTTAAGAAAAGATCAATCATTGTAGCAGAGAAATATAACTATGTTACACTTGATACAAAATCCTTTGAACCAATGGTTACATTACGATTGCTTCAGATCAATAATATGAGTTTGGAAGGCGAGTTTCTTCCCGATGAACTGAAATGGCTACAATGGCAAGGATGTCCTTTGGAATGCATTCCTTTGGACACATTGCCACGTGAACTGGCTATCCTTGATCTCTCAAATGCTGAGAAAATTAAAAGCTTGAGTGCATTGGAAAGTCACAACAAGGTTCCAGAGAACCTATTGGTCATTAACCTCTCCGACTGCTACCAACTTGCTGCGATCCCTGATTTATCTGGGTGTCTCAAGCTAGAGAAAATTATTATGGAGAATTGCATTAATCTAAAATGGATTCATGAATCAATTGGCAGTTTGACTACCTTGCGTAATTTGAATTTGAGGCGTTGTAAAATCATCACTGAGCTTCCCAGTGATGTGTCTGGGCTGAAACATCTGGAGATCCTAGTTCTTTCTAGTTGCACCAATTTGAAAGTATTACCCGAAAACATAGGCATACTTAAATCGCTGAAAACACTTGAGGCTGATGGCACTGCTATAGTAAAGTTGCCCAAGTCCATTTTTCGCTTGACCAAACTCGAACGACTTGTTTTAGACAGTTGCTCATATTTGGGAAGACTGCCAAACTGCATTGGAAAATTATGTTCTTTGCAAGAATTATCTCTTAATCAATCAGGTTTACAAGAATTACCCAAAACTATTGGATATTTGAAAAACCTTGAGAAATTAAGTTTGAATTGGTGTGCATCTCTCACTCAGTTGCCAGATTCTATTGGAAATCTCGTATCGTTGACAAAGCTTTTGGCTTACAACAGTGGAATTAAAGAACTCCCTTCCACCATTGGTTCTTTATCCTTTCTGAGAACATTATCAGTTGGAAACAGTAAACGTCTCAGTAAATTGCCTGATTCAATTAAAACTCTGGCCTCAATTATTGAACTTGAGTTAGATGGAACACCCATCAAATATCTTCCAGATCAAATTGGAGAAATGAAACAACTAAGGAAGCTTGATATTGGGAATTGCAGCAATCTTGAATCATTACCAAAATTCATTGGCCACCTAGGATCTCTTACTTCGCTGAACATAAACAACGGAAATATCAAAGAATTACCAGTGTCAATTGGATTATTGGAAAATCTTGTTACCTTAACATTGAACAAATGTAGAATGCTTAAACACCTCCCAGCTTCTATAGGAAAATTGAAATCTCTATGTCACTTAAAGATGGAGGAAACAGCTATGTTTGACTTGCCTGAAAGTTTCGGTATGCTCTCAAGCTTGAGATCACTGAGAATGGCAAAGAGGCCTGCTTCAGTTCCCATATCTGTGGAGAACACTGGCTCTTTTGTGATACCGTCTTCTTTTTGCAATCTGACCTTACTATATGAGTTCGATGCCCGTTCTTGGGGGTTATCTGGGAAAATTCCTGATGAATTCGAGAAGCTATCATTTATAGAGACTTTAAATTTGGGTCAAAACAATTTCCATAGCCTTCCTTCCAGTTTGAAAGGTCTTTCCTTTCTCAAGAAACTCTTACTTCCGAATTGCATGGAGCTGACTTCTCTCCCCTCACTTCCTTCAAGCTTGATCGAGCTAAACGCTGATAATTGTTATGCATTAGAAACTATACACAACATGTCAAATTTAGAGAGTTTGGAGGAGTTGAAGCTCACAAACTGTGAGAAAGTGGCGGATATTCCAGGTCTTGAATGCTTGAAATCCTTGAGAAGATTGTTCCTTAGTGGTTGCAATGCATGCTCCTCCAAAGCACGCAAAGGACTTTCAAAGGTTGCACTGAGAAATCTTCAGAACTTGAGCATGCCAGGAACCAAGTTACCTGAATGGTTTTCTGGAGGAACTGTCAGCTTTTCCAAGCACAAAAATCTTGAGCTAACAAGTGTAGTTGTAGGTGTTAATTTCTCAATTAACCATAACAATATGAATATTGAAACACCTGGAGTGGTTGATGTTCAAGCAAATGTTTTCAAATCGGGCAAACAAATATTTAGTTCAGGGCTAAACATATGGGGAGTGCCAAGGACAGATGAACCACACATACAGTTGCAAAGGTTCCATGATTACCATCCATTGGTAGCCTTCTTAAAAGACGCTGATACGGTTAGTGTGACAAAGAGGAGTCCTCCTTTTGATGAGAGGTTTGAATTGATAAAATGTGGAATTCATCTAATCTATGAAGGGGATGATGATTATGAGGGAGACGAAGAATCGCTGGACCAAGGGTTACAATCTGTCTCAGAAAGGTGTATGTCCGGTGTTGAAAGAAGAGATTGA 3984 0.3948 MSSSSSLSGGAFRLRWDVFLSFRGEDTRECFTKKLYESLHGQGVRAFMDDEGLDRGDRIDITLLQAIDDSAASIVIISRNYADSHWCLDELVRIFECKRLVIPVFYKVDPSHVRKQSGPFQKGFTDLENRFGNLMVSKWRHSMKLLGGLAGFVFNDSYEGQLENLIHLLVKRVLKELSNTPMVVAEFLVGLNERVDKVIHLLQVQPNSVKVLGLYGMGGVGKTTLAKALFNTLVARFERRCFVSNVRNSSSKEGGLLSLQSNIIKDLSSQQGAQSFVSDVNAGIATIKRIVHENPVLLVLDDVDNVSQLDALIGKREWFYKGSCIIITTRDTTALPEKHVNQMYEVKELYDEEALQLFSYHALKKKDPPPSFLDLSKKIVSLTGRMPLALEVFGCFLCERRRVEEWEDAVVKLRTIRPGNLHDVLKISYDGLDEQEKCIFLDIACFFLQMEMKRGDVIDILRGCGFRGEIAMTILVQKCLIKIKHDNTLWMHDQIRDMGRQIVMDENHVDPGMRSRLWDRAEIMSVLKSKKGTRCIQGIVLDFKKRSIIVAEKYNYVTLDTKSFEPMVTLRLLQINNMSLEGEFLPDELKWLQWQGCPLECIPLDTLPRELAILDLSNAEKIKSLSALESHNKVPENLLVINLSDCYQLAAIPDLSGCLKLEKIIMENCINLKWIHESIGSLTTLRNLNLRRCKIITELPSDVSGLKHLEILVLSSCTNLKVLPENIGILKSLKTLEADGTAIVKLPKSIFRLTKLERLVLDSCSYLGRLPNCIGKLCSLQELSLNQSGLQELPKTIGYLKNLEKLSLNWCASLTQLPDSIGNLVSLTKLLAYNSGIKELPSTIGSLSFLRTLSVGNSKRLSKLPDSIKTLASIIELELDGTPIKYLPDQIGEMKQLRKLDIGNCSNLESLPKFIGHLGSLTSLNINNGNIKELPVSIGLLENLVTLTLNKCRMLKHLPASIGKLKSLCHLKMEETAMFDLPESFGMLSSLRSLRMAKRPASVPISVENTGSFVIPSSFCNLTLLYEFDARSWGLSGKIPDEFEKLSFIETLNLGQNNFHSLPSSLKGLSFLKKLLLPNCMELTSLPSLPSSLIELNADNCYALETIHNMSNLESLEELKLTNCEKVADIPGLECLKSLRRLFLSGCNACSSKARKGLSKVALRNLQNLSMPGTKLPEWFSGGTVSFSKHKNLELTSVVVGVNFSINHNNMNIETPGVVDVQANVFKSGKQIFSSGLNIWGVPRTDEPHIQLQRFHDYHPLVAFLKDADTVSVTKRSPPFDERFELIKCGIHLIYEGDDDYEGDEESLDQGLQSVSERCMSGVERRD 1327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01724 1327 Gene3D - 14 176 IPR035897 -
Vifa4g01724 1327 Gene3D Ribonuclease Inhibitor 997 1209 IPR032675 -
Vifa4g01724 1327 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 151 IPR035897 -
Vifa4g01724 1327 CDD ABC_ATPase 197 331 - -
Vifa4g01724 1327 Pfam TIR domain 16 157 IPR000157 GO:0007165
Vifa4g01724 1327 Gene3D - 348 433 IPR042197 -
Vifa4g01724 1327 SMART LRR_typ_2 777 800 IPR003591 -
Vifa4g01724 1327 SMART LRR_typ_2 730 753 IPR003591 -
Vifa4g01724 1327 SMART LRR_typ_2 682 706 IPR003591 -
Vifa4g01724 1327 SMART LRR_typ_2 918 941 IPR003591 -
Vifa4g01724 1327 SMART LRR_typ_2 1046 1068 IPR003591 -
Vifa4g01724 1327 SMART LRR_typ_2 871 894 IPR003591 -
Vifa4g01724 1327 SMART LRR_typ_2 824 847 IPR003591 -
Vifa4g01724 1327 Gene3D - 177 343 IPR027417 -
Vifa4g01724 1327 Gene3D Ribonuclease Inhibitor 718 996 IPR032675 -
Vifa4g01724 1327 Pfam NB-ARC domain 193 417 IPR002182 GO:0043531
Vifa4g01724 1327 PRINTS Disease resistance protein signature 211 226 - -
Vifa4g01724 1327 PRINTS Disease resistance protein signature 892 908 - -
Vifa4g01724 1327 PRINTS Disease resistance protein signature 290 304 - -
Vifa4g01724 1327 PRINTS Disease resistance protein signature 383 397 - -
Vifa4g01724 1327 SUPERFAMILY L domain-like 1014 1247 - -
Vifa4g01724 1327 ProSiteProfiles TIR domain profile. 14 157 IPR000157 GO:0007165
Vifa4g01724 1327 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 772 IPR044974 GO:0006952
Vifa4g01724 1327 SMART till_3 15 149 IPR000157 GO:0007165
Vifa4g01724 1327 Gene3D Ribonuclease Inhibitor 533 717 IPR032675 -
Vifa4g01724 1327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 443 IPR027417 -
Vifa4g01724 1327 SUPERFAMILY Outer arm dynein light chain 1 556 698 - -
Vifa4g01724 1327 SUPERFAMILY RNI-like 653 988 - -
Vifa4g01724 1327 SUPERFAMILY "Winged helix" DNA-binding domain 421 528 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01724 Vifa-Chr4 488760798 488766065 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01724 16 883 WRKY Transcription Factor Family AT4G12020 28.891 1.54e-75 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01724 - - mtr:11408681 1996.09