Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01720 ATGTCTTCGTCTTCTTCTTCTTCTTCCACGGCTGGAGGAGCATTCAGGCTTCGCTGGGATGTGTTTTTGAGTTTCAGAGGTGAAGACACTCGCGAATGCTTCACCAAAAAACTATACGAATCTCTCCATGGTCAAGGAGTTCGTGCTTTCATGGACGACGAGGGTTTGGACCGTGGGGATCGTATAGATATCACTCTTCTTCAAGCTATTGATGATTCTGCTGCTTCCATTGTTATTATCTCTCGTAATTACGCTGACTCTCATTGGTGTCTCGATGAACTTGTCAGGATTTTTGAATGCAAGAGGCTTGTTATTCCCGTTTTCTACAAAGTTGATCCTTCTCATGTTAGGAAACAGTCCGGCCCTTTTCAAAAAGGTTTTACTGATCTTGAAAACAGATTTGGTAATCTTATGGTTTCCAAGTGGAGACATTCTATGAAGTTACTTGGTGGACTTGCTGGCTTTGTTTTCAATGACAGTTATGAAGGCCAGCTTGAAAATCTGATACACCTTTTGGTGAAAAGGGTTTTGAAGGAGTTAAGTAATACTCCAATGGTTGTCGCTGAGTTTCTAGTCGGGCTCAATCAACGTGTTGACAAGGTCATACATCTGTTACAACTTCAACCCAACAGCGTCAAGGTCTTAGGGTTGTATGGGATGGGAGGTGTTGGTAAGACAACACTTGCCAAGGCTCTTTTCAATACTCTCGTTGCTCGCTTTGAGCGTAGATGTTTCGTTTCAAATGTGAGAAACTCCTCGTCTAAAGAGGCTGGTTTGCTTTCTCTTCAAAGCAATATCATTAAAGATCTTTCTTCTCAACAAGGAGCTCAGAGTTTTGTAAGTGATGTCAATGCCGGTATTGCTACTATCAAAAGAATAGTTCATGAAAATCGAGTTCTGCTAGTGTTGGATGATGTTGATAATGTAAGCCAGCTTGATGCTTTGATTGGTAAAAGGGAATGGTTTTATAAAGGAAGCTGTATAATCATTACAACAAGGGACACGACTGCTTTGCCTGAAAAACATGTCAACCAGATGTATGAAGTCAAAGAATTGTATGATGAAGAAGCTCTACAATTATTCAGTTACCATGCTTTGAAGAAAAAGGACCCTCCACCAAGTTTTCTGGATCTTTCAAAGAAAATTGTATCTCTTACCGGAAGAATGCCATTGGCTTTGGAAGTGTTTGGTTGCTTTCTGTGTGAGAGAAGGAGGGTGGAGGAGTGGGAGGATGCTGTTGTGAAGCTGAGAACAATTCGACCCGGGAATCTTCATGATGTGTTGAAGATAAGTTATGATGGGTTGGACGAACAAGAGAAGTGTATATTCCTTGATATTGCTTGTTTCTTTCTTCAAATGGAAATGAAGCGCGGTGATGTGATTGATATATTGAGAGGTTGTGGGTTTAGAGGAGAGATAGCTATGACCATCCTTGTACAGAAATGCTTAATCAAAATAAAACATGACAATACCTTGTGGATGCATGATCAAATTAGAGACATGGGAAGACAGATTGTTATGGATGAAAACCATGTTGATCCTGGGATGCGAAGTAGACTGTGGGATCGTGCTGAAATCATGTCCGTTTTGAAGAGTAAGAAGGGAACAAGATGCGTACAAGGAATTGTACTAGACTTTAAGAAAAGATCAATCATTGTAGCAGAGAAATATAACTATGTTACACTTGATACAAAATCCTTTGAACCAATGGTTAACCTGAGATTGCTTCAGATCAATAATATGAGTTTGGAGGGCAAGTTTCTTCCAGATGAACTGAAATGGCTACAATGGCAAGGATGTCCTTTGGAGTGCATTCCTTTGGACACATTGCCACGTGAACTGGCTGTCCTTGATCTCTCAAATGCTGAGAAAATTAAGAGCTTGAGGGCATTGGAAAGTCACAACAAGCAGGTACCAGAGAACCTAATGGTCATTAAACTCTCTGACTGCTACCGACTTGCTGCAATCCCTGACTTATCTAGGTGTCTCAGGCTGGAGAAAATTATTTTGGATAGCTGCATTAATCTCAAAAGGATTCATGAATCAATTGGCAGTTTGACTACCTTGCGTATTTTGAGCTTGAGGCGTTGTGAAAACATCACTGAGATTCCCAGTGATGTATCTGGGCTGAAACATCTGGAGAGCCTCGTTCTTTCTAATTGCACCAAGTTGAAAGCATTACCAGAAAGCATAGGCATGCTTAACTCGCTGAAAACACTTGAGGTGGTTGACACTGCTATAGTAAAGTTGCCCGAGTCTATTTTTCGCTTGACCAAACTCGAACGACTCGTTTTAGATCATTGCTCATATTTGAGAAGACTGCCAAACTGCATTGGAAAATTATGTTCACTGCAAGAATTATCTCTTAATCATTCAGGCTTACTAGAATTACACGACACTCTGGGATCCTTGATAAATCTTGAGAAGTTAAGTTTGATTTGGTGTGAATCTCTCACGGTAATGCCTGATTCTATAGGAAATCTCGTATCGTTGACAGAACTTTTAGCTTTCAACAGTGGAATTAAAGAACTTCCTTCCACCATTGGTTCTTTATCCAATCTGAGAATGTTATCAGTTGGAAACAGTAAACATCTCAGTAAATTGCCTGATTCAATTAAAACTCTGGCCTCAATTATTGAACTTAAGTTAGATGGAACACCCATCAAATATCTTCCTGATCAAATTGGAGAAATGAAACAACTAAGGAAGCTTGATATTGGGAATTGCAGCAATCTTGAATCATTACCAGAATCCATTGGCCACCTAGGATCTCTTACTTCGCTGAACATAAACAATGGAAATATCAAAGAATTACCAGTGTCAATTGGATTATTGGAAAATCTTGTTACCTTAACATTGAACAAATGTAGAATGCTTAAACACCTCCCAGCTTCTATAGGAAACTTAAAATCTCTATGTCACTTAAATATGGTGGAAACAACTATGTCAGACTTGCCTGAAAGTTTTGGTATGCTCTCAAGCTTGAGAACACTAAGAATGGGAAAGACGCCTAATTTAGTTCCCATATCTGTGGAGAACACGGGCTCTTTTGTGATACCGTCTTCTTTCTGTAATCTGACCTTGCTATCTGATTTCGATGCCCATGCCTGGGGATTATCTGGTAAAATTCCCGATGAATTCGAGAAGCTATCATTAATGGAGACTTTAAAATTGGGCCACAACAATTTCCACAGCCTTCCTTCCAGTTTGAAAGGTCTTTCCTTTCTCAAGAAACTCTTACTTCCAAATTGCACTGAGCTGACTTCTCTCCCCTCACTTCCTTCAAGCTTGATCGAGCTAAACGCTGATAATTGCTACGCATTAGAAACTATACACGACATGTCAAATTTAGAGAGTTTGGAGGAGTTGAAACTCACAAATTGTGGGAAAGTGGCGGATATTCCAGGTCTTGAATGCTTGAAGTCCTTGAGAAGATTGTACCTGAGTGGTTGCCATGCATGCTCCTCCAAAGTACGCAAAAGACTTTCAAAGGTTGCACTGAGAAATTTTCAGAACTTGAGCATGCCAGGAACCAAATTACCTGAATGGTTTTCGGGAGAAACTGTAAACTTTACCAAGCGCAAAAATCTTGAGCTAAAAAGTGTAGTTGTAGGTGTTATTTTCTCAATTAACCACAACAATATGAAAAATCAAATCCCCGATGTGGTTGATATTCAAGCAAAGGTCCTCAAATCAGGCGAACAAGTTTTTAGTTCAGTGTTATTCATAGGTGGGGTGCCAAGGACAAATGAACCACAAATACACTTGCGAAGGTTCCATGATTACCATGCATTGCGAAGGGAGTTAAAAGAAGCTGATACGGTTTGTGTGGCAAAGCGAAGTCCTCCTTTTGATGAGAGGTTGGAATTGATAAAATCTGGAATTCATTTAATCTTTGAAGGGGATGATGATTATGAGGGAGACGAAGCATCGTTGGACAAAGGCCTACAATCTGTCTCAGAAAGGATAGCCAGGTTTTTTAACACTTATGATGAAGGTGTTGATGCAACTGAGAGTGAAGATAAGTGTCAACATGGATTGGAGCAGGTAAAAGAAAAGCCTCGAACTAGATTACTTGGTGTTAAAGGCAATTCTATTATTCTCTTCCTGTTTAATCTATTCTTTTTGCTGTTGGGTTGGTTTTGGTTGAGATATATGTCAAGTGTTGAAAGAAGAGATTGA 4182 0.3981 MSSSSSSSSTAGGAFRLRWDVFLSFRGEDTRECFTKKLYESLHGQGVRAFMDDEGLDRGDRIDITLLQAIDDSAASIVIISRNYADSHWCLDELVRIFECKRLVIPVFYKVDPSHVRKQSGPFQKGFTDLENRFGNLMVSKWRHSMKLLGGLAGFVFNDSYEGQLENLIHLLVKRVLKELSNTPMVVAEFLVGLNQRVDKVIHLLQLQPNSVKVLGLYGMGGVGKTTLAKALFNTLVARFERRCFVSNVRNSSSKEAGLLSLQSNIIKDLSSQQGAQSFVSDVNAGIATIKRIVHENRVLLVLDDVDNVSQLDALIGKREWFYKGSCIIITTRDTTALPEKHVNQMYEVKELYDEEALQLFSYHALKKKDPPPSFLDLSKKIVSLTGRMPLALEVFGCFLCERRRVEEWEDAVVKLRTIRPGNLHDVLKISYDGLDEQEKCIFLDIACFFLQMEMKRGDVIDILRGCGFRGEIAMTILVQKCLIKIKHDNTLWMHDQIRDMGRQIVMDENHVDPGMRSRLWDRAEIMSVLKSKKGTRCVQGIVLDFKKRSIIVAEKYNYVTLDTKSFEPMVNLRLLQINNMSLEGKFLPDELKWLQWQGCPLECIPLDTLPRELAVLDLSNAEKIKSLRALESHNKQVPENLMVIKLSDCYRLAAIPDLSRCLRLEKIILDSCINLKRIHESIGSLTTLRILSLRRCENITEIPSDVSGLKHLESLVLSNCTKLKALPESIGMLNSLKTLEVVDTAIVKLPESIFRLTKLERLVLDHCSYLRRLPNCIGKLCSLQELSLNHSGLLELHDTLGSLINLEKLSLIWCESLTVMPDSIGNLVSLTELLAFNSGIKELPSTIGSLSNLRMLSVGNSKHLSKLPDSIKTLASIIELKLDGTPIKYLPDQIGEMKQLRKLDIGNCSNLESLPESIGHLGSLTSLNINNGNIKELPVSIGLLENLVTLTLNKCRMLKHLPASIGNLKSLCHLNMVETTMSDLPESFGMLSSLRTLRMGKTPNLVPISVENTGSFVIPSSFCNLTLLSDFDAHAWGLSGKIPDEFEKLSLMETLKLGHNNFHSLPSSLKGLSFLKKLLLPNCTELTSLPSLPSSLIELNADNCYALETIHDMSNLESLEELKLTNCGKVADIPGLECLKSLRRLYLSGCHACSSKVRKRLSKVALRNFQNLSMPGTKLPEWFSGETVNFTKRKNLELKSVVVGVIFSINHNNMKNQIPDVVDIQAKVLKSGEQVFSSVLFIGGVPRTNEPQIHLRRFHDYHALRRELKEADTVCVAKRSPPFDERLELIKSGIHLIFEGDDDYEGDEASLDKGLQSVSERIARFFNTYDEGVDATESEDKCQHGLEQVKEKPRTRLLGVKGNSIILFLFNLFFLLLGWFWLRYMSSVERRD 1393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01720 1393 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 446 IPR027417 -
Vifa4g01720 1393 Gene3D Ribonuclease Inhibitor 555 677 IPR032675 -
Vifa4g01720 1393 ProSiteProfiles TIR domain profile. 17 160 IPR000157 GO:0007165
Vifa4g01720 1393 Pfam TIR domain 19 160 IPR000157 GO:0007165
Vifa4g01720 1393 SMART LRR_typ_2 1050 1072 IPR003591 -
Vifa4g01720 1393 SMART LRR_typ_2 828 851 IPR003591 -
Vifa4g01720 1393 SMART LRR_typ_2 686 710 IPR003591 -
Vifa4g01720 1393 SMART LRR_typ_2 781 804 IPR003591 -
Vifa4g01720 1393 SMART LRR_typ_2 734 757 IPR003591 -
Vifa4g01720 1393 SMART LRR_typ_2 922 945 IPR003591 -
Vifa4g01720 1393 SMART LRR_typ_2 875 898 IPR003591 -
Vifa4g01720 1393 SMART till_3 18 152 IPR000157 GO:0007165
Vifa4g01720 1393 PRINTS Disease resistance protein signature 214 229 - -
Vifa4g01720 1393 PRINTS Disease resistance protein signature 386 400 - -
Vifa4g01720 1393 PRINTS Disease resistance protein signature 896 912 - -
Vifa4g01720 1393 PRINTS Disease resistance protein signature 293 307 - -
Vifa4g01720 1393 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 705 IPR044974 GO:0006952
Vifa4g01720 1393 SUPERFAMILY L domain-like 866 1152 - -
Vifa4g01720 1393 Gene3D - 351 436 IPR042197 -
Vifa4g01720 1393 Gene3D Ribonuclease Inhibitor 678 1001 IPR032675 -
Vifa4g01720 1393 Gene3D - 17 179 IPR035897 -
Vifa4g01720 1393 Pfam NB-ARC domain 196 420 IPR002182 GO:0043531
Vifa4g01720 1393 SMART LRR_CC_2 1117 1143 IPR006553 -
Vifa4g01720 1393 SMART LRR_CC_2 686 716 IPR006553 -
Vifa4g01720 1393 SMART LRR_CC_2 898 925 IPR006553 -
Vifa4g01720 1393 SMART LRR_CC_2 804 831 IPR006553 -
Vifa4g01720 1393 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 154 IPR035897 -
Vifa4g01720 1393 Gene3D - 180 346 IPR027417 -
Vifa4g01720 1393 SUPERFAMILY L domain-like 493 909 - -
Vifa4g01720 1393 Gene3D Ribonuclease Inhibitor 1003 1221 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01720 Vifa-Chr4 488193992 488199379 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01720 784 998 WRKY Transcription Factor Family AT4G12020 30.093 1.21e-07 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01720 - - mtr:11408681 2075.83