Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01718 ATGTCTTCGTCTTCTTCTTCTTCTTCCACGGCTGGAGGAGCATTCAGGCTTCGCTGGGATGTGTTTTTGAGTTTCAGAGGTGAAGACACTCGCGAATGCTTCACCAAAAAACTATACGAATCTCTCCATGGTCAAGGAGTTCGTGCTTTCATGGACGATGAGGGTTTGGACCGTGGGGATCGTATAGATATCACTCTTCTTCAAGCTATTGATGATTCTGCTGCTTCCATTGTTATTATCTCTCGTAATTACGCTGACTCTCATTGGTGTCTCGATGAACTTGTCAGGATTTTTGAATGCAAGAGGCTTGTTATTCCCGTTTTCTACAAAGTTGATCCTTCTCATGTTAGGAAACAGTCCGGCCCTTTTCAAAAAGGTTTTACTGATCTTGAAAACAGATTTGGTAATCTTATGGTTTCCAAGTGGAGACATTCTATGAAGCTACTTGGTGGACTTGCTGGCTTTGTTTTCAATGACAGTTATGAAGGCCAGCTTGAAAATCTGATACACCTTTTGGTGAAAAGGGTTTTGAAGGAGTTAAGTAATACTCCAATGGTTGTCGCTGAGTTTCTAGTCGGACTCAACCAACGTGTTGACAAGGTCATACATCTGTTACAACTTCAACCCAACAGCGTCAAGGTCTTAGGCTTGTATGGGATGGGAGGTGTTGGTAAGACAACACTTGCCAAGGCTCTTTTCAATACTCTCGTTGCTCGCTTTGAGCGTAGATGTTTCGTTTCAAATGTGAGAAACTCCTCGTCTAAAGAGGGTGGTTTGCTTTCTCTTCAAACCAATATCATTAAAGATCTTTCTTCTCAAGAAGGAGCTCAGAGTTTTGTAAGTGATGTCAATGCCGGTATTGCTACTATCAAAAGAATAGTTCATGAAAATCGAGTTCTGCTAGTGTTGGATGATGTTGATAATGTAAGCCAGCTTGATGCTTTGATTGGTAAAAGGGAATGGTTTTATAAAGGAAGCTGTATAATCATTACAACAAGGGACACGACTGCTTTGCCTGAAAAACATGTCAACCAGATGTATGAAGTCAAAGAATTGTATGATGAAGAAGCTCTACAATTATTCAGTTACCATGCTTTGAAGAAAAAGGACCCTCCACCAAGTTTTCTGGATCTTTCAAAGAAAATTGTATCTCTTACCGGAAGAATGCCATTGGCTTTGGAAGTGTTTGGTTGCTTTCTGTGTGAGAGAAGGAGGGTGGAGGAGTGGGAGGATGCTGTTGTGAAGCTGAGAACAATTCGACCCGGGAATCTTCATGATGTGTTGAAGATAAGTTATGATGGGTTGGACGAACAAGAGAAGTGTATATTCCTTGATATTGCTTGTTTCTTTCTTCAAATGGAAATGAAGCGCGGTGACGTGATTGATATATTGAGAGGTTGTGGGTTTAGAGGAGAGATAGCTATGACGATCCTTGTACAGAAATGCTTAATCAAAATAAAACATGACAATACCTTGTGGATGCATGATCAAATTAGAGACATGGGAAGACAAATTGTTATGGATGAAAACCATGTTGATCCTGGGATGCGTAGTAGACTGTGGGATCGTGCTGAAATCATGTCCGTTTTGAAGAGTAAGAAGGGAACAAGATGCATACAAGGAATTGTACTAGATTTTAAGAAAAGATCAATCATTGTAGCAGAGAAATATAACTATGTTACACTTGATACAAAATCCTTTGAACCAATGGTTACATTACGATTGCTTCAGATCAATAATATGAGTTTGGAAGGCAAGTTTCTTCCCGATGAACTGAAATGGCTACAATGGCAAGGATGTCCTTTGGAATGCATTCCTTTGGACACATTGCCACGTGAACTGACTATCCTTGATCTCTCAAATGCTGAGAAAATTAAAAGCTTGAGTGCATTGGAAAGTCACCACAAGGTTCCAGAGAACCTATTGGTCATAAACCTCTCCGACTGCTACCAACTTGCTGCAATCCCTGATTTATCTGGGTGTCTCAAGCTAGAGAAAATTATTATGGAGAATTGCATTAATCTAAAAAGGATTCATGAATCAATTGGCAGTTTGACTACCTTGCGTAATTTGAATTTGAGGCGTTGTAAAATCATCACTGAGCTTCCCAGTGATGTGTCTGGGCTGAAACATCTGGAGATCCTAGTTGTTTCTAGTTGCACCAATTTGAAAGTATTACCCGAAAACATAGGCATACTTAAATCGCTGAAAACACTTGAGGCTGATGGCACTGCTATAGTAAAGTTGCCCGAGTCCATTTTTCGCTTGACCAAACTCGAACGACTTGTTTTAGACAGTTGCTCATATTTGGGAAGACTGCCAAACTGCATTGGAAAATTATGTTCTTTGCAAGAATTATCTCTTAATCAATCAGGTTTACAAGAATTACCCGAAAGTATTGGATCTTTGAAAAACCTTGAGAAATTAAGTTTGAACTGGTGTGCATCTCTCACTCAATTGCCAGATTCTATTGGAAATCTCGTATCGTTGACAGAGCTTTTGGCTTACAACAGTGGAGTTAAAGAACTCCCTTCCACCATTGGTTCTTTATCCTATCTGAGGACATTATCAGTTGGAAACAGTAAACATCTCTGTAAATTGCCTGACTCAATTAAAACTCTGGCCTCAATTATTGAACTTGAGTTAGATGGAACAGCTCTCAGATATCTTCCAGATCAAATTGGAGACATGAAACAACTAAGGAAACTTGATATTGGGAATTGCAACAATCTTGAATCATTACCAGAATCCGTTGGCCACCTAGGATCTCTTACTTCGCTGAACATAAACAATGGAAATATCAAAGAATTACCAGTGTCAATTGGATTATTGGAAAATCTTGTTACCTTAACATTGAACAAATGTAGAATGCTTAAACACCTCCCAGCTTCTATAGGAAAATTGAAATCTCTATGTCACTTAAAGATGGAGGAAACAGCTATGTTTGACTTGCCTGAAAGTTTCGGTATGCTCTCAAGCTTGAGATCACTGAGAATGGCAAAGAGGCCTGCTTCAGTTCCCATATCAGTGGAGAACACTGGCTCTTTTGTGATACCGTCTTCTTTTTGCAATCTGACCTTGCTATATGAGTTTGATGCCCGTGCTTGGAGATTATCTGGGAAAATTCCTGATGAATTCGAGAAGCTATCACTAATAGAGACTTTAAATTTGGGCCAAAACAATTTCCACAGCCTTCCTTCCAGTTTGAAAGGTCTTTCCTTTCTCAAGAAACTCTTACTTCCAAATTGCATGGAGCTGACTTCTCTCCCCTCACTTCCTTCAAGCTTGATCGAGCTAAACGCTGATAATTGTTATGCATTAGAAACTATACACGACATGTCAAATTTAGAGAGTTTGGAGGAGTTGAAGCTCACAAACTGTGAGAAAGTGGCGGATATTCCAGGACTTGAATGCTTGAAGTCCTTGAGAAGATTGTTCCTTAGTGGTTGCAGTGCATGCTCCTCCAAAGTACGCAAAAGACTTTCAAAGGTTGCACTGAGAAATCTTCAGAACTTGAGCATGCCAGGAACCAAGTTACCGGAATGGTTTTCTGGAGAAACTGTCAGCTTTTCCAAGCACAAAAATCTTGAGCTAACAAGTGTAGTTGTAGGTGTTAATTTCTCAATTAACCATAACAATATGAATATTGAAACACCTGGAGTGGTTGATGTTCAAGCAAATGTTTTCAAATCGGGCAAACAAATATTTAGTTCAGGGCTAAACATATGGGGAGTGCCAAGGACAGATGAACCACACATACAGTTGCAAAGGTTCCATGATTACCATCCATTGGTAGCCTTCTTAAAAGACGCTGATACGGTTAGTGTGACAAAGAGGAGTCCTCCTTTTGATGAGAGGTTTGAATTGATAAAAAGTGGAATTCATCTAATCTATGAAGGGGATGATGATTATGAGGGAGACGAAGAATCGCTGGACCAAGAATTACAATCTATCTCAGAAAGGTTGGCCAGATTTTTTAACACTTGTGAAGAAGGTGTTGATGGCACTGAGAGTGAAGATGAGTGTCACGAGGAATTGGAGCAGGAAAAAGAAAAGCCTCGAACCAGATTACTTGGTGTTAAAGGAAAATCCATTATGTTCTTCTTGTTTAATCTATTCATTGTGCTGTTGGGTTGGTTTTGGTTGAGGTGTATGTCCGGTGTTGAAAGAAGAGATTGA 4179 0.3975 MSSSSSSSSTAGGAFRLRWDVFLSFRGEDTRECFTKKLYESLHGQGVRAFMDDEGLDRGDRIDITLLQAIDDSAASIVIISRNYADSHWCLDELVRIFECKRLVIPVFYKVDPSHVRKQSGPFQKGFTDLENRFGNLMVSKWRHSMKLLGGLAGFVFNDSYEGQLENLIHLLVKRVLKELSNTPMVVAEFLVGLNQRVDKVIHLLQLQPNSVKVLGLYGMGGVGKTTLAKALFNTLVARFERRCFVSNVRNSSSKEGGLLSLQTNIIKDLSSQEGAQSFVSDVNAGIATIKRIVHENRVLLVLDDVDNVSQLDALIGKREWFYKGSCIIITTRDTTALPEKHVNQMYEVKELYDEEALQLFSYHALKKKDPPPSFLDLSKKIVSLTGRMPLALEVFGCFLCERRRVEEWEDAVVKLRTIRPGNLHDVLKISYDGLDEQEKCIFLDIACFFLQMEMKRGDVIDILRGCGFRGEIAMTILVQKCLIKIKHDNTLWMHDQIRDMGRQIVMDENHVDPGMRSRLWDRAEIMSVLKSKKGTRCIQGIVLDFKKRSIIVAEKYNYVTLDTKSFEPMVTLRLLQINNMSLEGKFLPDELKWLQWQGCPLECIPLDTLPRELTILDLSNAEKIKSLSALESHHKVPENLLVINLSDCYQLAAIPDLSGCLKLEKIIMENCINLKRIHESIGSLTTLRNLNLRRCKIITELPSDVSGLKHLEILVVSSCTNLKVLPENIGILKSLKTLEADGTAIVKLPESIFRLTKLERLVLDSCSYLGRLPNCIGKLCSLQELSLNQSGLQELPESIGSLKNLEKLSLNWCASLTQLPDSIGNLVSLTELLAYNSGVKELPSTIGSLSYLRTLSVGNSKHLCKLPDSIKTLASIIELELDGTALRYLPDQIGDMKQLRKLDIGNCNNLESLPESVGHLGSLTSLNINNGNIKELPVSIGLLENLVTLTLNKCRMLKHLPASIGKLKSLCHLKMEETAMFDLPESFGMLSSLRSLRMAKRPASVPISVENTGSFVIPSSFCNLTLLYEFDARAWRLSGKIPDEFEKLSLIETLNLGQNNFHSLPSSLKGLSFLKKLLLPNCMELTSLPSLPSSLIELNADNCYALETIHDMSNLESLEELKLTNCEKVADIPGLECLKSLRRLFLSGCSACSSKVRKRLSKVALRNLQNLSMPGTKLPEWFSGETVSFSKHKNLELTSVVVGVNFSINHNNMNIETPGVVDVQANVFKSGKQIFSSGLNIWGVPRTDEPHIQLQRFHDYHPLVAFLKDADTVSVTKRSPPFDERFELIKSGIHLIYEGDDDYEGDEESLDQELQSISERLARFFNTCEEGVDGTESEDECHEELEQEKEKPRTRLLGVKGKSIMFFLFNLFIVLLGWFWLRCMSGVERRD 1392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01718 1392 Gene3D Ribonuclease Inhibitor 550 670 IPR032675 -
Vifa4g01718 1392 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 857 IPR044974 GO:0006952
Vifa4g01718 1392 Gene3D - 17 179 IPR035897 -
Vifa4g01718 1392 Gene3D Ribonuclease Inhibitor 837 1012 IPR032675 -
Vifa4g01718 1392 PRINTS Disease resistance protein signature 214 229 - -
Vifa4g01718 1392 PRINTS Disease resistance protein signature 386 400 - -
Vifa4g01718 1392 PRINTS Disease resistance protein signature 293 307 - -
Vifa4g01718 1392 PRINTS Disease resistance protein signature 895 911 - -
Vifa4g01718 1392 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 446 IPR027417 -
Vifa4g01718 1392 SUPERFAMILY L domain-like 493 906 - -
Vifa4g01718 1392 Gene3D Ribonuclease Inhibitor 671 836 IPR032675 -
Vifa4g01718 1392 ProSiteProfiles TIR domain profile. 17 160 IPR000157 GO:0007165
Vifa4g01718 1392 SMART till_3 18 152 IPR000157 GO:0007165
Vifa4g01718 1392 SUPERFAMILY L domain-like 891 1184 - -
Vifa4g01718 1392 Gene3D Ribonuclease Inhibitor 1013 1220 IPR032675 -
Vifa4g01718 1392 Gene3D - 351 436 IPR042197 -
Vifa4g01718 1392 Gene3D - 180 346 IPR027417 -
Vifa4g01718 1392 Pfam NB-ARC domain 196 420 IPR002182 GO:0043531
Vifa4g01718 1392 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 154 IPR035897 -
Vifa4g01718 1392 SMART LRR_typ_2 874 897 IPR003591 -
Vifa4g01718 1392 SMART LRR_typ_2 780 803 IPR003591 -
Vifa4g01718 1392 SMART LRR_typ_2 827 850 IPR003591 -
Vifa4g01718 1392 SMART LRR_typ_2 921 944 IPR003591 -
Vifa4g01718 1392 SMART LRR_typ_2 685 709 IPR003591 -
Vifa4g01718 1392 SMART LRR_typ_2 1049 1071 IPR003591 -
Vifa4g01718 1392 SMART LRR_typ_2 733 756 IPR003591 -
Vifa4g01718 1392 Pfam TIR domain 19 160 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01718 Vifa-Chr4 487401553 487406852 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01718 19 856 WRKY Transcription Factor Family AT4G12020 28.938 6.56e-75 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01718 - - mtr:11408681 2081.99