Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01717 ATGTCTTCGTCTTCTTCTTCTTCTTCCACGGCTGGAGGAGCATTCAGGCTTCGCTGGGATGTGTTTTTGAGTTTCAGAGGTGAAGACACTCGCGAATGCTTCACCAAAAAACTATACGAATCTCTCCATGGTCAAGGAGTTCGTGCTTTCATGGACGATGAGGGTTTGGACCGTGGGGATCGTATAGATATCACTCTTCTTCAAGCTATTGATGATTCTGCTGCTTCCATTGTTATTATCTCTCGTAATTACGCTGACTCTCATTGGTGTCTCGATGAACTTGTCAGGATTTTTGAATGCAAGAGGCTTGTTATTCCCGTTTTCTACAAAGTTGATCCTTCTCATGTTAGGAAACAGTCCGGCCCTTTTCAAAAAGGTTTTACTGATCTTGAAAACAGATTTGGTAATCTTATGGTTTCCAAGTGGAGACATTCTATGAAGCTACTTGGTGGACTTGCTGGCTTTGTTTTCAATGACAGTTATGAAGGCCAGCTTGAAAATCTGATACACCTTTTGGTGAAAAGGGTTTTGAAGGAGTTAAGTAATACTCCAATGGTTGTCGCTGAGTTTCTAGTCGGACTCAACCAACGTGTTGACAAGGTCATACATCTGTTACAACTTCAACCCAACAGCGTCAAGGTCTTAGGCTTGTATGGGATGGGAGGTGTTGGTAAGACAACACTTGCCAAGGCTCTTTTCAATACTCTCGTTGCTCGCTTTGAGCGTAGATGTTTCGTTTCAAATGTGAGAAACTCCTCGTCTAAAGAGGGTGGTTTGCTTTCTCTTCAAACCAATATCATTAAAGATCTTTCTTCTCAAGAAGGAGCTCAGAGTTTTGTAAGTGATGTCAATGCCGGTATTGCTACTATCAAAAGAATAGTTCATGAAAATCGAGTTCTGCTAGTGTTGGATGATGTTGATAATGTAAGCCAGCTTGATGCTTTGATTGGTAAAAGGGAATGGTTTTATAAAGGAAGCTGTATAATCATTACAACAAGGGACACGACTGCTTTGCCTGAAAAACATGTCAACCAGATGTATGAAGTCAAAGAATTGTATGATGAAGAAGCTCTACAATTATTCAGTTACCATGCTTTGAAGAAAAAGGACCCTCCACCAAGTTTTCTGGATCTTTCAAAGAAAATTGTATCTCTTACCGGAAGAATGCCATTGGCTTTGGAAGTGTTTGGTTGCTTTCTGTGTGAGAGAAGGAGGGTGGAGGAGTGGGAGGATGCTGTTGTGAAGCTGAGAACAATTCGACCCGGGAATCTTCATGATGTGTTGAAGATAAGTTATGATGGGTTGGACGAACAAGAGAAGTGTATATTCCTTGATATTGCTTGTTTCTTTCTTCAAATGGAAATGAAGCGCGGTGACGTGATTGATATATTGAGAGGTTGTGGGTTTAGAGGAGAGATAGCTATGACGATCCTTGTACAGAAATGCTTAATCAAAATAAAACATGACAATACCTTGTGGATGCATGATCAAATTAGAGACATGGGAAGACAAATTGTTATGGATGAAAACCATGTTGATCCTGGGATGCGTAGTAGACTGTGGGATCGTGCTGAAATCATGTCCGTTTTGAAGAGTAAGAAGGGAACAAGATGCATACAAGGAATTGTACTAGATTTTAAGAAAAGATCAATCATTGTAGCAGAGAAATATAACTATGTTACACTTGATACAAAATCCTTTGAACCAATGGTTACATTACGATTGCTTCAGATCAATAATATGAGTTTGGAAGGCAAGTTTCTTCCCGATGAACTGAAATGGCTACAATGGCAAGGATGTCCTTTGGAATGCATTCCTTTGGACACATTGCCACGTGAACTGACTATCCTTGATCTCTCAAATGCTGAGAAAATTAAAAGCTTGAGTGCATTGGAAAGTCACCACAAGCAGGTTCCAGAGAACCTATTGGTCATAAACCTCTCCGACTGCTACCAACTTGCTGCAATCCCTGATTTATCTGGGTGTCTCAAGCTAGAGAAAATTATTATGGAGAATTGCATTAATCTAAAAAGGATTCATGAATCAATTGGCAGTTTGACTACCTTGCGTAATTTGAATTTGAGGCGTTGTAAAATCATCACTGAGCTTCCCAGTGATGTGTCTGGGCTGAAACATCTGGAGATCCTAGTTGTTTCTAGTTGCACCAATTTGAAAGTATTACCCGAAAACATAGGCATACTTAAATCGCTGAAAACACTTGAGGCTGATGGCACTGCTATAGTAAAGTTGCCCGAGTCCATTTTTCGCTTGACCAAACTCGAACGACTTGTTTTAGACAGTTGCTCATATTTGGGAAGACTGCCAAACTGCATTGGAAAATTATGTTCTTTGCAAGAATTATCTCTTAATCAATCAGGTTTACAAGAATTACCCGAAAGTATTGGATCTTTGAAAAACCTTGAGAAATTAAGTTTGAACTGGTGTGCATCTCTCACTCAATTGCCAGATTCTATTGGAAATCTCGTATCGTTGACAGAGCTTTTGGCTTACAACAGTGGAGTTAAAGAACTCCCTTCCACCATTGGTTCTTTATCCTATCTGAGGACATTATCAGTTGGAAACAGTAAACATCTCTGTAAATTGCCTGACTCAATTAAAACTCTGGCCTCAATTATTGAACTTGAGTTAGATGGAACAGCTCTCAGATATCTTCCAGATCAAATTGGAGACATGAAACAACTAAGGAAACTTGATATTGGGAATTGCAACAATCTTGAATCATTACCAGAATCCGTTGGCCACCTAGGATCTCTTACTTCGCTGAACATAAACAATGGAAATATCAAAGAATTACCAGTGTCAATTGGATTATTGGAAAATCTTGTTACCTTAACATTGAACAAATGTAGAATGCTTAAACACCTCCCAGCTTCTATAGGAAAATTGAAATCTCTATGTCACTTAAAGATGGAGGAAACAGCTATGTTTGACTTGCCTGAAAGTTTCGGTATGCTCTCAAGCTTGAGATCACTGAGAATGGCAAAGAGGCCTGCTTCAGTTCCCATATCAGTGGAGAACACTGGCTCTTTTGTGATACCGTCTTCTTTTTGCAATCTGACCTTGCTATATGAGTTTGATGCCCGTGCTTGGAGATTATCTGGGAAAATTCCTGATGAATTCGAGAAGCTATCACTAATAGAGACTTTAAATTTGGGCCAAAACAATTTCCACAGCCTTCCTTCCAGTTTGAAAGGTCTTTCCTTTCTCAAGAAACTCTTACTTCCAAATTGCATGGAGCTGACTTCTCTCCCCTCACTTCCTTCAAGCTTGATCGAGCTAAACGCTGATAATTGTTATGCATTAGAAACTATACACGACATGTCAAATTTAGAGAGTTTGGAGGAGTTGAAGCTCACAAACTGTGAGAAAGTGGCGGATATTCCAGGACTTGAATGCTTGAAGTCCTTGAGAAGATTGTTCCTTAGTGGTTGCAGTGCATGCTCCTCCAAAGTACGCAAAAGACTTTCAAAGGTTGCACTGAGAAATCTTCAGAACTTGAGCATGCCAGGAACCAAGTTACCGGAATGGTTTTCTGGAGAAACTGTCAGCTTTTCCAAGCACAAAAATCTTGAGCTAACAAGTGTAGTTGTAGGTGTTAATTTCTCAATTAACCATAACAATATGAATATTGAAACACCTGGAGTGGTTGATGTTCAAGCAAATGTTTTCAAATCGGGCAAACAAATATTTAGTTCAGGGCTAAACATATGGGGAGTGCCAAGGACAGATGAACCACACATACAGTTGCAAAGGTTCCATGATTACCATCCATTGGTAGCCTTCTTAAAAGACGCTGATACGGTTAGTGTGACAAAGAGGAGTCCTCCTTTTGATGAGAGGTTTGAATTGATAAAAAGTGGAATTCATCTAATCTATGAAGGGGATGATGATTATGAGGGAGACGAAGAATCGCTGGACCAAGAATTACAATCTATCTCAGAAAGGTTGGCCAGATTTTTTAACACTTGTGAAGAAGGTGTTGATGGCACTGAGAGTGAAGATGAGTGTCACGAGGAATTGGAGCAGGAAAAAGAAAAGCCTCGAACCAGATTACTTGGTGTTAAAGGAAAATCCATTATGTTCTTCTTGTTTAATCTATTCATTGTGCTGTTGGGTTGGTTTTGGTTGAGGTGTATGTCCGGTGTTGAAAGAAGAGATTGA 4182 0.3977 MSSSSSSSSTAGGAFRLRWDVFLSFRGEDTRECFTKKLYESLHGQGVRAFMDDEGLDRGDRIDITLLQAIDDSAASIVIISRNYADSHWCLDELVRIFECKRLVIPVFYKVDPSHVRKQSGPFQKGFTDLENRFGNLMVSKWRHSMKLLGGLAGFVFNDSYEGQLENLIHLLVKRVLKELSNTPMVVAEFLVGLNQRVDKVIHLLQLQPNSVKVLGLYGMGGVGKTTLAKALFNTLVARFERRCFVSNVRNSSSKEGGLLSLQTNIIKDLSSQEGAQSFVSDVNAGIATIKRIVHENRVLLVLDDVDNVSQLDALIGKREWFYKGSCIIITTRDTTALPEKHVNQMYEVKELYDEEALQLFSYHALKKKDPPPSFLDLSKKIVSLTGRMPLALEVFGCFLCERRRVEEWEDAVVKLRTIRPGNLHDVLKISYDGLDEQEKCIFLDIACFFLQMEMKRGDVIDILRGCGFRGEIAMTILVQKCLIKIKHDNTLWMHDQIRDMGRQIVMDENHVDPGMRSRLWDRAEIMSVLKSKKGTRCIQGIVLDFKKRSIIVAEKYNYVTLDTKSFEPMVTLRLLQINNMSLEGKFLPDELKWLQWQGCPLECIPLDTLPRELTILDLSNAEKIKSLSALESHHKQVPENLLVINLSDCYQLAAIPDLSGCLKLEKIIMENCINLKRIHESIGSLTTLRNLNLRRCKIITELPSDVSGLKHLEILVVSSCTNLKVLPENIGILKSLKTLEADGTAIVKLPESIFRLTKLERLVLDSCSYLGRLPNCIGKLCSLQELSLNQSGLQELPESIGSLKNLEKLSLNWCASLTQLPDSIGNLVSLTELLAYNSGVKELPSTIGSLSYLRTLSVGNSKHLCKLPDSIKTLASIIELELDGTALRYLPDQIGDMKQLRKLDIGNCNNLESLPESVGHLGSLTSLNINNGNIKELPVSIGLLENLVTLTLNKCRMLKHLPASIGKLKSLCHLKMEETAMFDLPESFGMLSSLRSLRMAKRPASVPISVENTGSFVIPSSFCNLTLLYEFDARAWRLSGKIPDEFEKLSLIETLNLGQNNFHSLPSSLKGLSFLKKLLLPNCMELTSLPSLPSSLIELNADNCYALETIHDMSNLESLEELKLTNCEKVADIPGLECLKSLRRLFLSGCSACSSKVRKRLSKVALRNLQNLSMPGTKLPEWFSGETVSFSKHKNLELTSVVVGVNFSINHNNMNIETPGVVDVQANVFKSGKQIFSSGLNIWGVPRTDEPHIQLQRFHDYHPLVAFLKDADTVSVTKRSPPFDERFELIKSGIHLIYEGDDDYEGDEESLDQELQSISERLARFFNTCEEGVDGTESEDECHEELEQEKEKPRTRLLGVKGKSIMFFLFNLFIVLLGWFWLRCMSGVERRD 1393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01717 1393 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 858 IPR044974 GO:0006952
Vifa4g01717 1393 SUPERFAMILY "Winged helix" DNA-binding domain 424 531 IPR036390 -
Vifa4g01717 1393 Gene3D - 17 179 IPR035897 -
Vifa4g01717 1393 SUPERFAMILY RNI-like 565 835 - -
Vifa4g01717 1393 Gene3D Ribonuclease Inhibitor 1002 1203 IPR032675 -
Vifa4g01717 1393 Gene3D Ribonuclease Inhibitor 556 735 IPR032675 -
Vifa4g01717 1393 Pfam NB-ARC domain 196 420 IPR002182 GO:0043531
Vifa4g01717 1393 ProSiteProfiles TIR domain profile. 17 160 IPR000157 GO:0007165
Vifa4g01717 1393 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 446 IPR027417 -
Vifa4g01717 1393 PRINTS Disease resistance protein signature 214 229 - -
Vifa4g01717 1393 PRINTS Disease resistance protein signature 386 400 - -
Vifa4g01717 1393 PRINTS Disease resistance protein signature 896 912 - -
Vifa4g01717 1393 PRINTS Disease resistance protein signature 293 307 - -
Vifa4g01717 1393 SMART till_3 18 152 IPR000157 GO:0007165
Vifa4g01717 1393 Gene3D - 351 436 IPR042197 -
Vifa4g01717 1393 Gene3D - 180 346 IPR027417 -
Vifa4g01717 1393 Gene3D Ribonuclease Inhibitor 736 1001 IPR032675 -
Vifa4g01717 1393 SUPERFAMILY L domain-like 750 1000 - -
Vifa4g01717 1393 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 154 IPR035897 -
Vifa4g01717 1393 SUPERFAMILY L domain-like 1018 1251 - -
Vifa4g01717 1393 Pfam TIR domain 19 160 IPR000157 GO:0007165
Vifa4g01717 1393 SMART LRR_typ_2 875 898 IPR003591 -
Vifa4g01717 1393 SMART LRR_typ_2 781 804 IPR003591 -
Vifa4g01717 1393 SMART LRR_typ_2 828 851 IPR003591 -
Vifa4g01717 1393 SMART LRR_typ_2 922 945 IPR003591 -
Vifa4g01717 1393 SMART LRR_typ_2 1050 1072 IPR003591 -
Vifa4g01717 1393 SMART LRR_typ_2 734 757 IPR003591 -
Vifa4g01717 1393 SMART LRR_typ_2 686 710 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01717 Vifa-Chr4 487401553 487406852 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01717 19 857 WRKY Transcription Factor Family AT4G12020 29.172 2.16e-75 275