Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01716 ATGATGAAGGGATGGGATGGGATTCAATCTTCTCTCTCTTCTCGATCGATCCAACCTCAGGCTCCGTCTTATCGCACCATTTTCTGTAACGATCGTGAATCTAATCTTCTTGTTCGATTCAAGGGGAATTCAATATCGACTACAAAATACAACTTTTTCACCTTTCTGCCTAAAGGATTATTTGAACAGTTCAGACGGGTGGCTAATCTCTACTTTCTTACAATCTCAATTTTGTCAACCACCCCAATTAGTCCTGTCTCTCCAATAACTAATGTGCTTCCTCTATCTTTGGTGCTTCTCGTTTCTCTTATTAAGGAAGCTTTTGAGGACTGGAAACGTTTTCAAAATGATATGTCCATAAACAATAATGTGATAGATGTTTTACAAGATCAAAAGTGGGCGCCTATGCCCTGGAAAAAGTTGCAGGTCGGAGATATTATCAAGGTTAAGCAGGATGGATTCTTTCCTGCAGATTTACTTTTCTTGGCCAGTACGAATGCAGATGGTGTCTGCTACATTGAGACTGCTAATTTGGACGGGGAGACCAATTTGAAGATTAGGAAAGCATTGGAAAAGACCTGGGATTACCTGACCCCAGAGAAGGCATCCGAGTTTAAAGGTGAAATTCAATGTGAACAACCGAACAATTCCTTGTATACATTTACCGGAAATCTTTTGATTCAAAAGCAGACACTTCCACTAAGCCCAAACCAGATTCTTTTGCGAGGATGCAGTCTCAGAAATACAGAGTATATTGTTGGTGTTGTTATTTTTACAGGACAAGAAACAAAGGTGATGATGAATTCAATGAATGTTCCTTCCAAAAGAAGTACACTGGAGAGGAAACTTGACAAGCTCATACTCGCTCTCTTTGCAACACTCTTTATGATGTGTTTCATTGGAGCCATAGGCAGCGCTATTTTTGTGAACAAAAAATACTTCTATTTACATCTTGATTCATCAGAGGAGGGCTCAGCACAGTTCAATCCAAAAAACAGATTTCTGGTTTTTATCCTGACTATGTTTACCCTTATCACACTGTATTCAACAATCATCCCAATTTCACTTTATGTGTCTATAGAGATGATAAAATTTATTCAATCAACTCAATTTATCAACAAGGATTTGGGAATGTACCACAATGAAACTAATACACCGGCACTGGCCAGAACTTCAAATCTGAATGAAGAACTTGGACAGGTGGAATACATTTTCTCTGACAAAACTGGGACCCTAACAAGAAACTTAATGGAGTTCTTCAAGTGTTCGATAGGAGTAGAGGTCTATGGAAATGGTGTGACTGAAATTGAGAGAGGACTAGCAGAGCGCAATGGCATGAAAATTGAGGAAAATAGACCGCCCCATACTGTGCATGAGAAGGGTTTCAATTTTGAAGATGCCAGGCTTATGAGAGGAGCTTGGAGGAATGAACCCAATCCTGATGCCTGCAGAGAATTCTTCAGATGTCTTGCTATATGCCATACTGTACTACCAGAGGGTGATGAGCAGTCCCCTGAAAAGATCAAATATCAAGCTGCATCACCTGATGAGGCTGCTTTGGTTATTGCTGCAAAGAACTTTGGTTTCTTCTTCTACAGGCGAACACCTACAACGATATATGTAAGAGAATCTCATGTTGAGAAGATGGGCAAAGTTCAAGATTTATCTTATGAGATTCTCAACGTGCTCGAGTTTAACAGTACAAGGAAGCGTCAGTCAGTTGTATGTCGTTGTCCAGATGGAAGGCTTGTACTATACTGCAAGGGTGCTGATAATGTAATCTATGAGAGACTGGCTGATTATAACAATGATATCAAGAAAATTACTAGGGAGTATTTGGAGCAATTCGGATCTTCTGGACTACGTACATTATGCCTGGCATACAGAGAATTGCATCCAGATGTTTACGAAAGCTGGAATGAGAAGTTTATCCAGGCCAAGTCTTCTCTACATGACCGTGAAAAGAAATTAGACGAGGTGGCAGAACTCATAGAAAATGATCTCATTTTAATTGGTAGCACTGCAATAGAAGACAAGCTTCAAGAGGGAGTACCAGCATGCATAGAGACTCTTCAAAGAGCTGGAATTAAAATTTGGGTTCTGACAGGGGACAAGATTGAAACAGCAATAAACATAGCATATGCATGCAATTTGATCAACAATGATATGAAGCAATTCGTTATCAGTTCAGAAACTGATGCAATTAGAGAAGTTGAAGAAAGGGGTGACCAAGTGGAAATTGCTCGATTTATTAAAGAAGAAGTGAAAAAAGAGCTGAAGAAAAGCCTCGAGGAAGCACAAAGCTATTTTCACTCTTTATCTGGACCAAAGTTAGCACTTATAATTGATGGAAAGTGTCTAATGTATGCATTGGATCCAAGTTTAAGGGTGATGCTGCTCAATCTTAGTTTGAATTGTCACGCTGTTGTTTGCTGCCGAGTTTCTCCTCTACAGAAAGCACAGGTCACAAGTATGGTCAAGAAAGGTGCAAAGAAAATAACCCTTAGTATTGGTGATGGAGCTAATGATGTAAGCATGATTCAAGCCGCTCATGTTGGTGTTGGCATAAGTGGAATGGAGGGAATGCAAGCTGTGATGGCTAGTGATTTTGCCATTGCACAGTTCCGTTACCTTGAAGATTTGCTTCTTGTTCATGGCCGCTGGTCATATCTGCGAATATGCAAGGTGGTGTTATATTTCTTTTACAAGAATCTTACATTTACTCTTACTCAGTTTTGGTTTACTTTTCAAACTGGGTTTTCTGGTCAAAGGTTTTATGATGATTGGAATCAGTCTTTATATAATGTTATTTTCTCGGCACTGCCTGTGATTATAGTTGGACTATTTGACAAGGATGTTAGTGCATCTCTATCCAAGAAATATCCCACATTATACATGGAAGGAATAAAAAATGTCTACTTCCAATGGAAAGTCGTGGCCATATGGGCCTTTTTTTCTGTATATCAGTCTCTAGTATTCTTCTTTTTTGTGAGTACATCAAATTTAAGTGCTAAAAACTCGGCGGGAAAGACATTTGGACTCTGGGATGTCAGTACAATGGCTTTCACTTGTGTTGTAGTAACCGTCAACTTGAGATTACTTATGATTTGTAATTCAATCACAAGATGGCACTACATTAGTGTTGGGGGAAGCATATTAGCTTGGTTCGTTTTTATTTTTATATATTCAGGGATTACAACTCCTTATGATCGACAGGAGAATGTTTATTTTGTCATATATGTCTTGATGAGTACTGTCTATTTCTACCTCACACTATTACTTGTTCCTGTTGCTGCACTTTTCTGCGACTTTGTTTATCAAGGGGTTCAAAGATGGTTCTTCCCCTATGATTATCAGATTGTTCAAGAAATGCATAGAGATGAGATTGATAGCACTGGTAGGGCTCAGCTGCTGGAGATAGGGAACCAGCTTTCGCCAACTGAAGCAAGGAGCTATGCCATATCTCAACTCCCACGAGAGTTATCAAAGCACACCGGATTTGCTTTTGATTCACCTGGTTACGAGTCATTTTTCGCCACACAGCTTGGCGCTTATGCTCCACCAAAGGCATGGGATGTAGCAAGACGGGCTAGCATGAGATCGCGGCCCAAGACTGAACAGAAAAAGTAA 3630 0.3975 MMKGWDGIQSSLSSRSIQPQAPSYRTIFCNDRESNLLVRFKGNSISTTKYNFFTFLPKGLFEQFRRVANLYFLTISILSTTPISPVSPITNVLPLSLVLLVSLIKEAFEDWKRFQNDMSINNNVIDVLQDQKWAPMPWKKLQVGDIIKVKQDGFFPADLLFLASTNADGVCYIETANLDGETNLKIRKALEKTWDYLTPEKASEFKGEIQCEQPNNSLYTFTGNLLIQKQTLPLSPNQILLRGCSLRNTEYIVGVVIFTGQETKVMMNSMNVPSKRSTLERKLDKLILALFATLFMMCFIGAIGSAIFVNKKYFYLHLDSSEEGSAQFNPKNRFLVFILTMFTLITLYSTIIPISLYVSIEMIKFIQSTQFINKDLGMYHNETNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGVEVYGNGVTEIERGLAERNGMKIEENRPPHTVHEKGFNFEDARLMRGAWRNEPNPDACREFFRCLAICHTVLPEGDEQSPEKIKYQAASPDEAALVIAAKNFGFFFYRRTPTTIYVRESHVEKMGKVQDLSYEILNVLEFNSTRKRQSVVCRCPDGRLVLYCKGADNVIYERLADYNNDIKKITREYLEQFGSSGLRTLCLAYRELHPDVYESWNEKFIQAKSSLHDREKKLDEVAELIENDLILIGSTAIEDKLQEGVPACIETLQRAGIKIWVLTGDKIETAINIAYACNLINNDMKQFVISSETDAIREVEERGDQVEIARFIKEEVKKELKKSLEEAQSYFHSLSGPKLALIIDGKCLMYALDPSLRVMLLNLSLNCHAVVCCRVSPLQKAQVTSMVKKGAKKITLSIGDGANDVSMIQAAHVGVGISGMEGMQAVMASDFAIAQFRYLEDLLLVHGRWSYLRICKVVLYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWNQSLYNVIFSALPVIIVGLFDKDVSASLSKKYPTLYMEGIKNVYFQWKVVAIWAFFSVYQSLVFFFFVSTSNLSAKNSAGKTFGLWDVSTMAFTCVVVTVNLRLLMICNSITRWHYISVGGSILAWFVFIFIYSGITTPYDRQENVYFVIYVLMSTVYFYLTLLLVPVAALFCDFVYQGVQRWFFPYDYQIVQEMHRDEIDSTGRAQLLEIGNQLSPTEARSYAISQLPRELSKHTGFAFDSPGYESFFATQLGAYAPPKAWDVARRASMRSRPKTEQKK 1209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01716 1209 SUPERFAMILY HAD-like 393 879 IPR036412 -
Vifa4g01716 1209 NCBIfam HAD-IC family P-type ATPase 810 916 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g01716 1209 FunFam Phospholipid-transporting ATPase IC 402 414 - -
Vifa4g01716 1209 Pfam E1-E2 ATPase 123 361 - -
Vifa4g01716 1209 Gene3D - 533 669 IPR023299 GO:0000166
Vifa4g01716 1209 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 20 1164 - -
Vifa4g01716 1209 CDD P-type_ATPase_APLT_Dnf-like 42 997 - -
Vifa4g01716 1209 FunFam Phospholipid-transporting ATPase 670 877 - -
Vifa4g01716 1209 NCBIfam phospholipid-translocating P-type ATPase 40 1123 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vifa4g01716 1209 FunFam Phospholipid-transporting ATPase 101 270 - -
Vifa4g01716 1209 SFLD Haloacid Dehalogenase 387 888 - -
Vifa4g01716 1209 ProSitePatterns E1-E2 ATPases phosphorylation site. 407 413 IPR018303 -
Vifa4g01716 1209 Pfam Phospholipid-translocating P-type ATPase C-terminal 865 1115 IPR032630 -
Vifa4g01716 1209 PRINTS P-type cation-transporting ATPase superfamily signature 405 419 - -
Vifa4g01716 1209 PRINTS P-type cation-transporting ATPase superfamily signature 837 856 - -
Vifa4g01716 1209 FunFam Phospholipid-transporting ATPase 514 669 - -
Vifa4g01716 1209 SUPERFAMILY Calcium ATPase, transmembrane domain M 36 1115 IPR023298 -
Vifa4g01716 1209 Gene3D - 670 877 IPR023214 -
Vifa4g01716 1209 Pfam Phospholipid-translocating ATPase N-terminal 27 91 IPR032631 -
Vifa4g01716 1209 Pfam Cation transport ATPase (P-type) 501 598 - -
Vifa4g01716 1209 SUPERFAMILY Calcium ATPase, transduction domain A 123 266 IPR008250 -
Vifa4g01716 1209 Gene3D - 105 269 - -
Vifa4g01716 1209 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 456 675 IPR023299 GO:0000166
Vifa4g01716 1209 SFLD p-type atpase 387 888 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01716 Vifa-Chr4 487087928 487125173 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01716 17 1208 Primary Pumps ATPases AT1G59820 79.631 0.0 2031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01716 K14802 - gmx:100815547 2227.98