Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01686 ATGTCTGGAAACAACTTGGAGGGCAAAATTCTATCCCTTCACAACATGACTTCTTTGAGGGTGGTTAGATTTGATGAGAACAATTTAAATGGAAGTCTACCAAATGACTTTTTCAACCAACTTCCTCTACTTGAAAATTTTACTTTATACTCCAATCAATTTGAAGGAAGCATTCCACAATCAATTGGAAACTGCACATCTCTCACATTCTTAGGTCTAGCAACGAACTTTTTCTCAGGTTGGATACCAGAAGAAATTGGCTATCTTGACAAACTTAAGTTTCTAATATTGGCAAACAATAGCTTAACTGGTTCTATTCCTTCCAAACTCCTCAACATGTCTACATTGACATACTTGCATCTTGAACAAAATTACATGTCAGGCAAAATTCCATCAAATGCAAGATATAGCCTTCCTAGCATGCAACAACTACACTTGAGTTTTAACAACTTTGTTGGAAATATTCCAAATAACATATTCAATGCTTCTAAGCTCATTCAATTACAATTGAGTTACAATGCATTCAATGGAACTCTACCCAATATTGCTTTTGGAGATTTGAGGTTCCTTCAAGGGTTTCTCGTAAATGACAATGATTTAACCATAGATGATACTCTTCAACTCTTTACTTTCCTGGCAAGTTGTAGACAATTGAAATATATAGACATATCAAGAAATCATATACAATCCAGACTTCCTAAGTCAATTGGAAACATAACTTCAGAAAGCTTTATGGTTGAATCATGTGGAATTGATGGTGATATTCCCCTAGAAGCTGGAAACATGAGCAACTTGTTATATTTTTCTCTAAATGGGAATAATATAAACGGACCAATACCTGGAACTTTCGAAGGGTTACAAAAACTTCAGATGTTGGATCTTGGCAACAATGGATTGCAAGGATCATTTATTGAGAAGCTTTGTGAACTTGGGAGTTTGAGTGAGTTGTATCTACAAAATAATAAGCTTTCTGGTGTTTTACCAACTTGTTTGGGAAATATGATTTCTCTGAGAAAGTTACACATAGGATCCAACAAGTTCAACTCAAAGATACCTTTCTCTCTTTGGGGTCTTAGAGATATCTTGGAGGTAAATTTGTCCTCTAATATTTTCATGGGAAATCTTCCACCTGATATTGGGAACTTGAGAGCAATCATACTATTAGATCTATCAAGTAATCAAATTTCAAGCAACATTCCTTCAACAATCAGTTTCATAAAAACTTTGCAGAATCTTTCCTTAGCACATAACAAACTTTACGGGTCGATTCCCACATCACTTGGTGACATGGTAAGCTTGATCTCCTTGGACTTGTCCCAAAATTTGTTAACCGGTGTTATTCCAAACACCTTAACATCTCTTTCGTATCTTCGAAACATCAATTTTTCATACAATAGATTACAAGGAGAGATTCCTGATGGTGGACCTTTCAAGAATTTCACAGCTCAGTCATTTATGCATAATGAAGCACTTTGCGGAAATCCTCGCCTACAAGTACCTCCATGTGGTACACAAGTTAAAAAAAAATCACTGGCAAAGAATTTATTACTCAAATGCATACTTCCGATAGTTGTTTCGATCACTGTGGTTGTTGCATGCATAATACTTTTAAAAGTTAATAAAAGAAAAAAGGTTGAAAATATTCTTGAAAGAGGTTTATCAACTTTAGGGGCTCCAAGAAGAATTTCCTACTATGAACTTGTGCAAGCAACAAATGGATTCAATGAAGATAATCTAATTGGAAGGGGTGGCTTTGGCTCTGTGTATCAGGGAAAGCTTTCTGATGGTGAGATGATTGCAGTAAAAGTAATTGGTTTGAACTCAGAGGCAAAATCAAAAAGCTTTGATACAGAATGCAATGCACTGAGAAATTTAAGACATCGAAATTTAGTTAAGATTATCAGCAGTTGCTCAAATCTTGATTTCAAGTCATTAGTGATGGAGTTCATGTCAAATGGAAGTGTGGACCAATGGTTATATTCAGATAGTGTTTACTTAAATTTCATGCAAAGGTTAAATATAATGATAGATGTTGCATCTGCATTGGAATATCTGCATCATGGTTCTTCAACACCCGTGGTTCATTGCGATCTAAAGCCTACTAATGTATTGTTGGATGATGATATGGTTGCACATGTTAGCGATTTTGGTATTGCAAAGCTCATGGATGAAGAACAATCTAAAACTCATACACAGACTTTGGCTACTCTTGGATACCTTGCACCAGAGTATGGCTCTAAAGGAATTGTTTCTATAAAAGGAGATGTATACAGCTATGGAATTATGCTAATGGAAATCTTCACCAGAAGAAAGCCAACGGATGATATGTTTGATGCAGACCTAAGTTTGAAAACATGGATCATGGGATCATTGCCTAGTTCAATTATGGAGGTTGTGGATTCTAATTTAATCCAACAAAATGAAAAACAAATCGATGACATGTTGACTTATATGCCATCTATTTTTGGTCTAGCCTTGAATTGTTGTGAGCATTTACCTGAAGCAAGAATTAATATGACAGATGTTAGTGTGTCACTAATCAGAATCAAAACTATGGTCCAAGACAAGAATAGGGTCTAG 2580 0.3539 MSGNNLEGKILSLHNMTSLRVVRFDENNLNGSLPNDFFNQLPLLENFTLYSNQFEGSIPQSIGNCTSLTFLGLATNFFSGWIPEEIGYLDKLKFLILANNSLTGSIPSKLLNMSTLTYLHLEQNYMSGKIPSNARYSLPSMQQLHLSFNNFVGNIPNNIFNASKLIQLQLSYNAFNGTLPNIAFGDLRFLQGFLVNDNDLTIDDTLQLFTFLASCRQLKYIDISRNHIQSRLPKSIGNITSESFMVESCGIDGDIPLEAGNMSNLLYFSLNGNNINGPIPGTFEGLQKLQMLDLGNNGLQGSFIEKLCELGSLSELYLQNNKLSGVLPTCLGNMISLRKLHIGSNKFNSKIPFSLWGLRDILEVNLSSNIFMGNLPPDIGNLRAIILLDLSSNQISSNIPSTISFIKTLQNLSLAHNKLYGSIPTSLGDMVSLISLDLSQNLLTGVIPNTLTSLSYLRNINFSYNRLQGEIPDGGPFKNFTAQSFMHNEALCGNPRLQVPPCGTQVKKKSLAKNLLLKCILPIVVSITVVVACIILLKVNKRKKVENILERGLSTLGAPRRISYYELVQATNGFNEDNLIGRGGFGSVYQGKLSDGEMIAVKVIGLNSEAKSKSFDTECNALRNLRHRNLVKIISSCSNLDFKSLVMEFMSNGSVDQWLYSDSVYLNFMQRLNIMIDVASALEYLHHGSSTPVVHCDLKPTNVLLDDDMVAHVSDFGIAKLMDEEQSKTHTQTLATLGYLAPEYGSKGIVSIKGDVYSYGIMLMEIFTRRKPTDDMFDADLSLKTWIMGSLPSSIMEVVDSNLIQQNEKQIDDMLTYMPSIFGLALNCCEHLPEARINMTDVSVSLIRIKTMVQDKNRV 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01686 859 ProSiteProfiles Protein kinase domain profile. 574 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01686 859 SMART LRR_typ_2 430 453 IPR003591 -
Vifa4g01686 859 SMART LRR_typ_2 138 162 IPR003591 -
Vifa4g01686 859 SMART LRR_typ_2 89 113 IPR003591 -
Vifa4g01686 859 SMART LRR_typ_2 310 333 IPR003591 -
Vifa4g01686 859 SMART LRR_typ_2 41 65 IPR003591 -
Vifa4g01686 859 SMART LRR_typ_2 382 406 IPR003591 -
Vifa4g01686 859 SMART LRR_typ_2 334 358 IPR003591 -
Vifa4g01686 859 SMART LRR_typ_2 16 40 IPR003591 -
Vifa4g01686 859 SMART LRR_typ_2 262 285 IPR003591 -
Vifa4g01686 859 SUPERFAMILY Protein kinase-like (PK-like) 556 846 IPR011009 -
Vifa4g01686 859 Gene3D Phosphorylase Kinase; domain 1 557 649 - -
Vifa4g01686 859 Pfam Protein kinase domain 575 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01686 859 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 211 506 - -
Vifa4g01686 859 SUPERFAMILY L domain-like 246 495 - -
Vifa4g01686 859 PANTHER OS04G0122200 PROTEIN 82 849 - -
Vifa4g01686 859 SUPERFAMILY L domain-like 6 241 - -
Vifa4g01686 859 SMART serkin_6 574 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01686 859 Gene3D Transferase(Phosphotransferase) domain 1 650 858 - -
Vifa4g01686 859 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 650 858 - -
Vifa4g01686 859 FunFam Serine-threonine protein kinase plant-type 555 649 - -
Vifa4g01686 859 ProSitePatterns Protein kinases ATP-binding region signature. 580 602 IPR017441 GO:0005524
Vifa4g01686 859 ProSitePatterns Serine/Threonine protein kinases active-site signature. 693 705 IPR008271 GO:0004672|GO:0006468
Vifa4g01686 859 Pfam Leucine rich repeat 408 467 IPR001611 GO:0005515
Vifa4g01686 859 Pfam Leucine rich repeat 261 299 IPR001611 GO:0005515
Vifa4g01686 859 Gene3D Ribonuclease Inhibitor 1 210 IPR032675 -
Vifa4g01686 859 Gene3D Ribonuclease Inhibitor 211 503 IPR032675 -
Vifa4g01686 859 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01686 Vifa-Chr4 483610371 483613351 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01686 1 859 Receptor kinase-like Gene Family AT3G47570 36.801 5.60e-175 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa4g01686 Pkinase 6.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01686 - K13420 mtr:25481440 1149.04