Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01683 ATGATCAATATGTTATCTTATATCTTTCTTTCTTCTTTCGCACTTTATTGTTTTGTTTCTTGCTCAGCTGCAGATATAAAAAATATTAGCACAGATGAATCTTCTCTTCTAGCATTTAAATCTCTCATTACTTCAGATCCACATGGTATGTTGGCTAATAATTGGTCAACTTCATCATCTGTATGCAATTGGGTTGGTGTCACTTGTGATAATAAACACAATAGAGTCCACAGTTTGAATCTCGGAAGCATGGGTCTTAGAGGCACTCTTTCTCCCAATTTAGGGAATTTGTCGTTCTTAGTTATACTTGATCTCTCCAACAATAGTTTTGGTGGTCTGTTTCCTAATGAGGTATGTAGGTTACGCAGACTAAAGGTTCTTGATTTCAGCTTTAACCGGTTTGTTGGAGAAATTCCTATGGCATTGGGAGAATTATCACAGCTTCAACAATTAAATCTCAGTATTAACCATTTCAGTGGTTTTATCCCTCCATCTTTATGCAACTTGTCTAAGTTAGAGTTCTTTAATTTTGGAAAAAACTCCTTGGAAGGAACCATTCCACCTGTAATAGGACAACTTGGTCGACTGAAACTATTGATTCTTAGTTACAACAAGTTGTCGGGATTCATACCCAAAGAAATCTCCAACATATCTTCACTTCAAGGATTGTTTGTAGGTTCTAACTATTTTTCAGGTCCAATACCCGAGGAGATTGGTTATCTTGATCAACTTGAGTATCTAATATTGGCATATAACAACTTTAGTGGATCTATTCCTTCCAATTTCCTCAACATATCATCACTCACAAACTTGCAGATTGAACATAATAGTCTCTCAGCGAGTATATTCAACTTTTCTAACCTCATTCAACTTGACTTGAGTGAGAATGCATTCAGTGGAACTTTTCCTAATAATGCCTTTGCAAATTTAAGATATTTGAAATATCTAGAGTTATCAAGCAATCACATTCTATCGAATCTTCCCAAGTCAATTGGAAACATAACTTCAGTAACCTTTATGGTAGATTTTTGTGGAATTGATGGTAATATTCCCTTAGAAATTGGAAACATGAGCAATTTGATATCTCTTTCTATGGTTGGGAATAATATAAATGGCCCCATACCTGGAACATTCAAAGGGTTACAGAAACTTCAGAGATTGGAATTGAGCAACAATGGTCTACATGGATCATTTATTGATGAGCTTTGTGAAATGAGGAGTTTAATTGATTTGTATCTATATAATACTACGCTTTCTGGTGTTTTACCAACATGTTTGGGAAACATGACTTTTCTTGAACATTTAGATTTAGGATATAACAACTTGAACTCTAAGATACCTTCCTCTCTTTGGAGTCTCACAGATATCTTAGAGATAAATTTGACCAATAATGCTTTCACTGGTAATCTTCCACTTGAGATTGGGAACTTAAGAGCAATTGTACTATTAGATATATCAAGAAATCTAATTTCAGGCAATATTCCTACAACCATTACTTTCTTAAAAACAATGGAAAATATATCCTTAGCACATAACAATCTGCAAGGGTCAATTCCTTCATCACTTGGTGACATGGTAGGCTTGATCTCCTTGGACTTGTCCCAAAATATGCTCACTGGTGTTATTCCAAAATCTTTAACGTCACTTTTGTATCTTCAAAATATCAACTTCTCATATAATAGTTTACAAGGAGAGATTCCCGATGGTGGACTTTTCAAAACTTTAACAGCCCAATCTTTTATTCATAATGAAGCTCTTTGCGGAAATCCTCGCCTACAAGTGCCTCTATGTGCTAAACAAGTTAGGAAAATTTCAAGGAAAAAAAAATTATTACTCAAATGCACAATTCCCTTAGTTTTGCTAACCGTTTTTGTTGTTGCATGCATAATACTCATAAAACATAAACGAAAAAAGGTTGAAAATAATCTTGAGAAAGGTTTATCAACTTTAGGAGGTCAAAGAAGAATTTCTTATTATGAACTTGTGCAAGCAACAAATGGATTCAATGAGGGTAACTTACTTGGAAAGGGTGGATTTGGCTCTGTGTATCAGGGAAAACTTCTTGATGGTGAGATGATTGCAGTTAAAGTTATTGATTTGCAGTCAGAGAAAAAATCAAAAAGCTTTGATGCAGAATGTAATTCAATGAGAAATCTACGACATCGAAATCTGGTTAAGATTATCAGCAGTTGTTCAAATCTCGATTTCAAATCATTGGTGATGGAGTTCATGTCAAATGGAAGTGTAGACAAATGGTTATATTCAGATAACTATTGCTTAAATTTCTTGCAAAGGTTAAATATAATGATAGATGTTGCATCTGCATTGGAATATCTGCATCATGGTTCTTCAATACCAGTGGTTCATTGTGATCTAAAGCCTACTAATGTGTTGTTGGATGAAAATATGGTTGCACATGTTAGCGATTTTGGTATTGCAAAGCTCATGGATGAAGGACAATCTAAAACTCATACAAACACTTTGGCTACTATTGGATACCTTGCACCAGAGTATGGATATGAGGGAATTGTTTCTGTCAAAGGGGATGTGTACAGCTATGGGATAATGTTAATGGAAATATTCACAAGAAGAAAACCTACAGATGATATGTTTGTTGGAGATCTAAGTTTGAAAACATGGATCGGTGAATCATTGTCTGGTTTAATTTTGGAGGTTTTGGATTCTAATTTAGTCCAACAAAATGGAGAACAAATGGATGACATATTGACACACGTGTCATCTATTTTTGGTTTAGCCCTGAATTGTTGTGAACATTCACCTGGAGCAAGAATCAATATGGCAGATGTTAAAGCAACGCTAATCAAAATCAAGACTTTAATTTTTGGCAGAAGTGCGGCCTAG 2862 0.3477 MINMLSYIFLSSFALYCFVSCSAADIKNISTDESSLLAFKSLITSDPHGMLANNWSTSSSVCNWVGVTCDNKHNRVHSLNLGSMGLRGTLSPNLGNLSFLVILDLSNNSFGGLFPNEVCRLRRLKVLDFSFNRFVGEIPMALGELSQLQQLNLSINHFSGFIPPSLCNLSKLEFFNFGKNSLEGTIPPVIGQLGRLKLLILSYNKLSGFIPKEISNISSLQGLFVGSNYFSGPIPEEIGYLDQLEYLILAYNNFSGSIPSNFLNISSLTNLQIEHNSLSASIFNFSNLIQLDLSENAFSGTFPNNAFANLRYLKYLELSSNHILSNLPKSIGNITSVTFMVDFCGIDGNIPLEIGNMSNLISLSMVGNNINGPIPGTFKGLQKLQRLELSNNGLHGSFIDELCEMRSLIDLYLYNTTLSGVLPTCLGNMTFLEHLDLGYNNLNSKIPSSLWSLTDILEINLTNNAFTGNLPLEIGNLRAIVLLDISRNLISGNIPTTITFLKTMENISLAHNNLQGSIPSSLGDMVGLISLDLSQNMLTGVIPKSLTSLLYLQNINFSYNSLQGEIPDGGLFKTLTAQSFIHNEALCGNPRLQVPLCAKQVRKISRKKKLLLKCTIPLVLLTVFVVACIILIKHKRKKVENNLEKGLSTLGGQRRISYYELVQATNGFNEGNLLGKGGFGSVYQGKLLDGEMIAVKVIDLQSEKKSKSFDAECNSMRNLRHRNLVKIISSCSNLDFKSLVMEFMSNGSVDKWLYSDNYCLNFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPTNVLLDENMVAHVSDFGIAKLMDEGQSKTHTNTLATIGYLAPEYGYEGIVSVKGDVYSYGIMLMEIFTRRKPTDDMFVGDLSLKTWIGESLSGLILEVLDSNLVQQNGEQMDDILTHVSSIFGLALNCCEHSPGARINMADVKATLIKIKTLIFGRSAA 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01683 953 Pfam Leucine Rich Repeat 432 453 IPR001611 GO:0005515
Vifa4g01683 953 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 306 601 - -
Vifa4g01683 953 Gene3D Ribonuclease Inhibitor 181 282 IPR032675 -
Vifa4g01683 953 SUPERFAMILY L domain-like 342 590 - -
Vifa4g01683 953 ProSiteProfiles Protein kinase domain profile. 668 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01683 953 Gene3D Phosphorylase Kinase; domain 1 651 743 - -
Vifa4g01683 953 FunFam Leucine-rich repeat receptor-like protein kinase 29 187 - -
Vifa4g01683 953 SMART serkin_6 668 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01683 953 SMART LRR_typ_2 97 121 IPR003591 -
Vifa4g01683 953 SMART LRR_typ_2 381 405 IPR003591 -
Vifa4g01683 953 SMART LRR_typ_2 285 309 IPR003591 -
Vifa4g01683 953 SMART LRR_typ_2 241 264 IPR003591 -
Vifa4g01683 953 SMART LRR_typ_2 429 453 IPR003591 -
Vifa4g01683 953 SMART LRR_typ_2 310 334 IPR003591 -
Vifa4g01683 953 SMART LRR_typ_2 193 217 IPR003591 -
Vifa4g01683 953 SMART LRR_typ_2 525 548 IPR003591 -
Vifa4g01683 953 SMART LRR_typ_2 145 169 IPR003591 -
Vifa4g01683 953 SUPERFAMILY Protein kinase-like (PK-like) 649 940 IPR011009 -
Vifa4g01683 953 Gene3D Transferase(Phosphotransferase) domain 1 744 947 - -
Vifa4g01683 953 FunFam Serine-threonine protein kinase plant-type 649 743 - -
Vifa4g01683 953 Pfam Protein kinase domain 669 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01683 953 SUPERFAMILY L domain-like 32 279 - -
Vifa4g01683 953 ProSitePatterns Protein kinases ATP-binding region signature. 674 696 IPR017441 GO:0005524
Vifa4g01683 953 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vifa4g01683 953 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672|GO:0006468
Vifa4g01683 953 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 213 942 - -
Vifa4g01683 953 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 188 282 - -
Vifa4g01683 953 SUPERFAMILY RNI-like 280 336 - -
Vifa4g01683 953 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 744 952 - -
Vifa4g01683 953 Gene3D Ribonuclease Inhibitor 283 598 IPR032675 -
Vifa4g01683 953 Gene3D Ribonuclease Inhibitor 28 180 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01683 Vifa-Chr4 482487731 482495117 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01683 31 951 Receptor kinase-like Gene Family AT3G47570 37.487 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa4g01683 Pkinase 1.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01683 - K13420 mtr:25481440 1086.25