Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01682 ATGGGTCTTAGAGGCACTCTTTCTCCAAATTTAGGGAATTTGTCGTTCTTAGTTATACTTGATCTCTCCAACAATCGTTTTGGTGGCATGTTTCCTAACGAGGTATGTAGGTTACGCAGACTAAAGGTTCTTGATTTCGGCTTTAACGATTTTGTTGGAGAAATTCCTATGGCATTGGGAGAATTATCACAGCTTCAACAATTAAATCTCAGTATTAACCATTTCAGTGGTTTTATCCCTCCATCTTTATGCAACTTGTCTAAGTTAGAGTTCTTTAATTTTGGAAAAAATTCCTTGGAAGGAACCATTCCACCTGTAATAGGACAACTTGGTCGACTGAAACGATTGATTCTTCCTGACAACAAGTTGTCGGGATTCATACCCAAAGAAATCTCCAACATATCTTCACTTCAAGGATTGTTTGTAGGTTCTAACTATTTTTCAGGTCCAATACCCGAGGAGATTGGTTATCTTGATCAACTTGAGTATCTAATATTGGCATATAACAACTTTAGTGGATCTATTCCTTCCAATTTCCTCAACATATCATCACTCACAAACTTGCAGATTGAACATAATAGTCTCTCAGGTATAATTCCATCTAATGCGAACCTTCCTAGCATAGTAACCATACACTTGTATCACAACAATTTTGTTGGAAATATTCCAGCGAGTATATTCAACTTTTCTAACCTCATTCAACTTGACTTGAGTGAGAATGCATTCAGTGGAACTTTGCCTAATAATGCCTTTGCAAATTTAAGGTTCCTAGAAGATCTTATGATATATGACAATGATTTGACTATTAATGATTCTCTTCAATTCTTTAATTCCTTGACAAATTGTAGATATTTGAAATATCTAGAGTTATCAAGCAATCATATTCTATCGAATCTTCCCAAGTCAATTGGAAACATAACTTCAGTAAACTTTATGGTAGATTTTTGTGGAATTTATGGTAATATTCCCTTAGAAATTGGAAACATGAGCAATTTGATATCTCTTTCTATGGTTGGGAATAATATAAATGGCCCCATACCTAGAACATTCAAAGGGTTACAAAAACTTCAGAGTTTGGGATTGAGCAACAATGGTCTACATGGATCATTTATTGATGAGCTTTGTGAAATGAGGAGTTTAATTGAGTTGTATCTATATAATACTATGCTTTCTGGTGTTTTACCAACATGTTTGGGAAACATGACTTTTCTTGAACATTTAGACTTAGGATATAACAACTTGAACTCTAAGATACCTTCCTCTCTTTGGAGTCTCACAGATATCTTAGAGATAAATTTGACCAATAATGCTTTCACTGGTAATCTTCCACTTGAGATTGGGAACTTAAGAGCAATTGTACTATTAGATATATCAAGAAATCTAATTTCAGGCAATATTCCTACAACCATTACTTTCTTAAAAACAATGGAAAATATATCCTTAGCACATAACAATCTGCAAGGGTCAATTCCTTCATCACTTGGTGACATGGTAGGCTTGATCTCCTTGGACTTGTCCCAAAATATGCTCACTGGTGTTATTCCAAAATCTTTAACGTCACTTTTGTATCTTCAAAATATCAACTTCTCATATAATAGTTTACAAGGAGAGATTCCCGATGGTGGACTTTTCAAAACTTTAACAGCCCAATCTTTTATTCATAATGAAGCTCTTTGCGGAAATCCTCGCCTACAAGTGCCTCTATGTGCTAAACAAGTTAGGAAAATTTCAAGGAAAAAAAAAATATTACTCAAATGCACAATTCCCTTAGTTTTGCTAACCATTTTTGTTATTGCATGCATAATACTCATAAAACATAAACGAAAAAAGGTTGAAAATAATCTTGAGAAAGGTTTATCAACTTTAGGAGGTCAAAGAAGAATTTCTTATTATGAACTTGTGCAAGCAACAAATGGATTCAATGAGGGTAACTTACTTGGAAAGGGTGGATTTGGCTCTGTGTATCAGGGAAAACTTCTTGATGGTGAGATGATTGCAGTTAAAGTTATTGATTTGCAGTCAGAGGAAAAATCAAAAAGCTTTGATGCAGAATGTAATTCAATGAGAAATCTACGACATCGAAATCTGGTTAAGATTATCAGCAGTTGTTCAAATCTCGATTTCAAATCATTGGTGATGGAGTTCATGTCAAATGGAAGTGTAGACAAATGGTTATATTCAGATAACTATTGCTTAAATTTCTTGCAAAGGTTAAATATAATGATAGATGTTGCATCTGCATTGGAATATCTGCATCATGGTTCTTCAATACCAGTGGTTCATTGTGATCTAAAGCCTACTAATGTGTTGTTGGATGAAAATATGGTTGCACATGTTAGCGATTTTGGTATTGCAAAGCTCATGGATGAAGGACAATCTAAAACTCATACAAACACTTTGGCTACTATTGGATACCTTGCACCAGAGTATGGATCTGAGGGAATTGTTTCTGTCAAAGGGGATGTGTTCAGCTATGGGATAATGTTAATGGAAATATTCACAAGAAGAAAACCTACAGATGATATGTTTGTTGGAGATCTAAGTTTGAAAACATGGATCGGTGAATCATTGTCTGGTTTAATTTTGGAGGTTTTGGATTCTAATTTAGTCCAACAAAATGGAGAACAAATGGATGACATATTGACACACATGTCATCTATTTTTGGTTTAGCCCTGAATTGTTGTGAACATTCACCTGGAGCAAGAATCAATATGGCAGATGTTAAAGCAACGCTAATCAAAATCAAGACTTTAATTTTTGGCAGAAGTGCGGCCTAG 2778 0.3459 MGLRGTLSPNLGNLSFLVILDLSNNRFGGMFPNEVCRLRRLKVLDFGFNDFVGEIPMALGELSQLQQLNLSINHFSGFIPPSLCNLSKLEFFNFGKNSLEGTIPPVIGQLGRLKRLILPDNKLSGFIPKEISNISSLQGLFVGSNYFSGPIPEEIGYLDQLEYLILAYNNFSGSIPSNFLNISSLTNLQIEHNSLSGIIPSNANLPSIVTIHLYHNNFVGNIPASIFNFSNLIQLDLSENAFSGTLPNNAFANLRFLEDLMIYDNDLTINDSLQFFNSLTNCRYLKYLELSSNHILSNLPKSIGNITSVNFMVDFCGIYGNIPLEIGNMSNLISLSMVGNNINGPIPRTFKGLQKLQSLGLSNNGLHGSFIDELCEMRSLIELYLYNTMLSGVLPTCLGNMTFLEHLDLGYNNLNSKIPSSLWSLTDILEINLTNNAFTGNLPLEIGNLRAIVLLDISRNLISGNIPTTITFLKTMENISLAHNNLQGSIPSSLGDMVGLISLDLSQNMLTGVIPKSLTSLLYLQNINFSYNSLQGEIPDGGLFKTLTAQSFIHNEALCGNPRLQVPLCAKQVRKISRKKKILLKCTIPLVLLTIFVIACIILIKHKRKKVENNLEKGLSTLGGQRRISYYELVQATNGFNEGNLLGKGGFGSVYQGKLLDGEMIAVKVIDLQSEEKSKSFDAECNSMRNLRHRNLVKIISSCSNLDFKSLVMEFMSNGSVDKWLYSDNYCLNFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPTNVLLDENMVAHVSDFGIAKLMDEGQSKTHTNTLATIGYLAPEYGSEGIVSVKGDVFSYGIMLMEIFTRRKPTDDMFVGDLSLKTWIGESLSGLILEVLDSNLVQQNGEQMDDILTHMSSIFGLALNCCEHSPGARINMADVKATLIKIKTLIFGRSAA 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01682 925 SUPERFAMILY L domain-like 314 562 - -
Vifa4g01682 925 Pfam Leucine Rich Repeat 404 425 IPR001611 GO:0005515
Vifa4g01682 925 Gene3D Ribonuclease Inhibitor 1 97 IPR032675 -
Vifa4g01682 925 Gene3D Ribonuclease Inhibitor 205 311 IPR032675 -
Vifa4g01682 925 Gene3D Ribonuclease Inhibitor 98 204 IPR032675 -
Vifa4g01682 925 FunFam Serine-threonine protein kinase plant-type 621 715 - -
Vifa4g01682 925 SUPERFAMILY RNI-like 3 306 - -
Vifa4g01682 925 SMART serkin_6 640 919 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01682 925 Gene3D Phosphorylase Kinase; domain 1 623 715 - -
Vifa4g01682 925 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 278 573 - -
Vifa4g01682 925 Gene3D Ribonuclease Inhibitor 312 570 IPR032675 -
Vifa4g01682 925 Gene3D Transferase(Phosphotransferase) domain 1 716 919 - -
Vifa4g01682 925 ProSitePatterns Protein kinases ATP-binding region signature. 646 668 IPR017441 GO:0005524
Vifa4g01682 925 PANTHER OS04G0122200 PROTEIN 157 916 - -
Vifa4g01682 925 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1 205 - -
Vifa4g01682 925 ProSitePatterns Serine/Threonine protein kinases active-site signature. 759 771 IPR008271 GO:0004672|GO:0006468
Vifa4g01682 925 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 716 924 - -
Vifa4g01682 925 ProSiteProfiles Protein kinase domain profile. 640 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01682 925 SMART LRR_typ_2 377 400 IPR003591 -
Vifa4g01682 925 SMART LRR_typ_2 401 425 IPR003591 -
Vifa4g01682 925 SMART LRR_typ_2 497 520 IPR003591 -
Vifa4g01682 925 SMART LRR_typ_2 62 86 IPR003591 -
Vifa4g01682 925 SMART LRR_typ_2 14 38 IPR003591 -
Vifa4g01682 925 SMART LRR_typ_2 229 253 IPR003591 -
Vifa4g01682 925 SMART LRR_typ_2 158 181 IPR003591 -
Vifa4g01682 925 Pfam Protein kinase domain 641 842 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01682 925 SUPERFAMILY Protein kinase-like (PK-like) 621 912 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01682 Vifa-Chr4 482459223 482465785 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01682 6 920 Receptor kinase-like Gene Family AT3G47090 35.474 1.02e-177 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa4g01682 Pkinase 9.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01682 - K13420 mtr:25481440 1189.87