Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01681 ATGATCAATCAATTATATTATATCTTTCTTTTTTGGTTCTCACTTTATTGCTTCATTACTTGCTCAGCTGCAGATATAAAAAATATTAGCACAGATGAATCTTCTCTTCTAGCATTTAAGTCTCTCATTACTTCAGATCCACATGGTATGTTGGCTAATAATTGGTCAACTTCATCATCTGTATGCAATTGGGTTGGTATCACTTGTGATAATAAACACAATAGAGTCCACAGTTTGAATCTCACAAACATGGGTCTTAGAGGCACTCTTTCTCCAAATTTAGGGAATTTGTCGTTCTTAGTTATACTTGATCTCTCCAACAATCGTTTTGGTGGCATGTTTCCTAACGAGGTATGTAGGTTACGCAGACTAAAGGTTCTTGATTTCGGCTTTAACGATTTTGTTGGAGAAATTCCTATGGCATTGGGAGAATTATCACAGCTTCAACAATTAAATCTCAGTATTAACCATTTCAGTGGTTTTATCCCTCCATCTTTATGCAACTTGTCTAAGTTAGAGTTCTTTAATTTTGGAAAAAATTCCTTGGAAGGAACCATTCCACCTGTAATAGGACAACTTGGTCGACTGAAACGATTGATTCTTCCTGACAACAAGTTGTCGGGATTCATACCCAAAGAAATCTCCAACATATCTTCACTTCAAGGATTGTTTGTAGGTTCTAACTATTTTTCAGGTCCAATACCCGAGGAGATTGGTTATCTTGGTCAACTTGAGTATTTAATATTGGCATATAACAACTTTAGTGGATCTATTCCTTCCAATTTCCTTAACAAATCATCACTCACAAACTTGCAGATTGAACATAATAGTCTCTCAGGTATAATTCCATCTAATACGAACCTTCCTAGCATAGTAACCATACACTTGTATCACAATAATTTTGTTGGAAATATTCCAGCGAGTATATTCAACTTTTCTAACCTCATTCAACTTGACTTGGGTGAGAATGCATTTAGTGGAACTTTGCCTAATAATGCCTTTGCAAATTTAAGATATTTGAAATATCTAGTGTTATCAAGCAATCATATTCTACCGAATCTTCCCAAGTCAATTGGAAACATAACTTCAGTAGCCTTTGTAGTAGATTTTTGTGGAATTTATGGTAATATTCCCTTAGAAATTGGAAACATGAGCAATTTGATAGCTCTTTCTATGGTTGGGAATAATATAAATGGCCCCATACCTAGAACATTAAAAGGGTTACAAAAACTTCAGAGATTGGGATTGAGCAACAATGGTCTACATGGATCATTTATTGATGAGCTTTGTGAAATGAGGAGTTTAATTGAGTTGTATCTATATAATACTATGCTTTCTGGTGTTTTACCAACATGTTTGGGAAACATGACTTTTCTTGAACATTTAGACTTAGGATATAACAACTTGAACTCTAAGATACCTTCCTCTCTTTGGAGTCTCACAGATATCTTAGAGATAAATTTGACCACTAATGCTTTCACTGGTAATCTTCCACTTGAGATTGGGAATTTAAGAGCAATTGTACTATTAGATATATCAAGAAATCTAATTTCAGGCAATATTCCTACAACCATTACTTTCTTAAAAACAGTGGAAAATATATCCTTAGCACATAACAATCTGCAAGGGTCAATTCCTTCATCACTTGGTGACATGGTAGGCTTGATCTCCTTGGACTTGTCCCAAAATATGCTCACTGGTGTTATTCCAAAATCTTTAACGTCACTTTTATATCTTCAAAATATCAACTTCTCATATAATAGTTTACAAGGAGAGATTCCCGATGGTGGACTTTTCAAAACTTTAACAGCCCAATCTTTTATTCATAATGAAGCTCTTTGCGGAAATCCTCGCCTACAAGTGCCTCTATGTGCTAAACAAGTTAGGAAAATTTCAAGGAAAAAAAAATTATTACTCAAATGCACAATTCCCTTAGTTTTGCTAACCGTTTTTGTTGTTGCATGCATAATACTCATAAAACATAAAAGCAAAAAGGTTGAAAATAATCTTGAGAAAGGTTTATCAACTTTAGGAGGTCAAAGAAGAATTTCTTATTATGAACTTGTGCAAGCAACAAATGGATTCAATGAGGGTAACTTACTTGGAAAGGGTGGATTTGGCTCTGTGTATCAGGGAAAACTTCTTGATGAATGTAATTCAATGAGAAATCTACGACATCGAAATCTGGTTAAGATTATCAGCAGTTGTTCAAATCTCGATTTCAAATCATTGGTGATGGAGTTCATGTCAAATGGAAGTGTAGACAAATGGTTATATTCATATAACTATTGCTTAAATTTCTTGCAAAGGTTAAATATAATGATAGATGTTGCATCTGCATTGGAATACCTCCATCATGGTTCTCCAATACCTGTGGTTCATTGTGATCTTAAGCCTACAAATGTGTTGTTGGATGAAAATATGGTTGCACATGTTAGCGATTTTGGTATTGCAAAGCTCATGGATGAAGGACAATCTAAAACTCATACAAACACTTTGGCTACTATTGGATACCTTGCACCAGAGTATGGATCTGAGGGAATTGTTTCTGTCAAAGGGGATGTGTACAGCTATGGGATAATGTTAATGGAAATCTTCACAAGAAGAAAACCTACAGATGATATGTTTATTGGAGATCTAAGTTTGAAAACATGGATCGGTGAATCACTGTCTGATTCAATTTTGGAGGTTTTGGATTCTAATTTAGTCCAACAAAATGGAGAACAAATGGATGACATATTGACACACATGTCATCTATTTTTGGTTTAGCCCTGAATTGTTGTGAACATTCACCTGGAGCAAGAATCAATATGGCAGATGTTAAAGCAACGCTAATCAAAATCAAGACTTTGATTTTTGGAAGAAGTGCGATCTAG 2877 0.3469 MINQLYYIFLFWFSLYCFITCSAADIKNISTDESSLLAFKSLITSDPHGMLANNWSTSSSVCNWVGITCDNKHNRVHSLNLTNMGLRGTLSPNLGNLSFLVILDLSNNRFGGMFPNEVCRLRRLKVLDFGFNDFVGEIPMALGELSQLQQLNLSINHFSGFIPPSLCNLSKLEFFNFGKNSLEGTIPPVIGQLGRLKRLILPDNKLSGFIPKEISNISSLQGLFVGSNYFSGPIPEEIGYLGQLEYLILAYNNFSGSIPSNFLNKSSLTNLQIEHNSLSGIIPSNTNLPSIVTIHLYHNNFVGNIPASIFNFSNLIQLDLGENAFSGTLPNNAFANLRYLKYLVLSSNHILPNLPKSIGNITSVAFVVDFCGIYGNIPLEIGNMSNLIALSMVGNNINGPIPRTLKGLQKLQRLGLSNNGLHGSFIDELCEMRSLIELYLYNTMLSGVLPTCLGNMTFLEHLDLGYNNLNSKIPSSLWSLTDILEINLTTNAFTGNLPLEIGNLRAIVLLDISRNLISGNIPTTITFLKTVENISLAHNNLQGSIPSSLGDMVGLISLDLSQNMLTGVIPKSLTSLLYLQNINFSYNSLQGEIPDGGLFKTLTAQSFIHNEALCGNPRLQVPLCAKQVRKISRKKKLLLKCTIPLVLLTVFVVACIILIKHKSKKVENNLEKGLSTLGGQRRISYYELVQATNGFNEGNLLGKGGFGSVYQGKLLDECNSMRNLRHRNLVKIISSCSNLDFKSLVMEFMSNGSVDKWLYSYNYCLNFLQRLNIMIDVASALEYLHHGSPIPVVHCDLKPTNVLLDENMVAHVSDFGIAKLMDEGQSKTHTNTLATIGYLAPEYGSEGIVSVKGDVYSYGIMLMEIFTRRKPTDDMFIGDLSLKTWIGESLSDSILEVLDSNLVQQNGEQMDDILTHMSSIFGLALNCCEHSPGARINMADVKATLIKIKTLIFGRSAI 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01681 958 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 188 282 - -
Vifa4g01681 958 FunFam Nuclear pore complex protein NUP107 29 187 - -
Vifa4g01681 958 Pfam Protein tyrosine and serine/threonine kinase 712 944 IPR001245 GO:0004672|GO:0006468
Vifa4g01681 958 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 749 957 - -
Vifa4g01681 958 SUPERFAMILY L domain-like 42 363 - -
Vifa4g01681 958 Gene3D Ribonuclease Inhibitor 181 284 IPR032675 -
Vifa4g01681 958 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 340 628 - -
Vifa4g01681 958 PANTHER OS04G0122200 PROTEIN 335 949 - -
Vifa4g01681 958 SUPERFAMILY L domain-like 369 617 - -
Vifa4g01681 958 SUPERFAMILY Protein kinase-like (PK-like) 672 949 IPR011009 -
Vifa4g01681 958 SMART serkin_6 695 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01681 958 Gene3D Phosphorylase Kinase; domain 1 716 752 - -
Vifa4g01681 958 Gene3D Phosphorylase Kinase; domain 1 665 715 - -
Vifa4g01681 958 Gene3D Transferase(Phosphotransferase) domain 1 753 952 - -
Vifa4g01681 958 Gene3D Ribonuclease Inhibitor 28 180 IPR032675 -
Vifa4g01681 958 ProSitePatterns Serine/Threonine protein kinases active-site signature. 792 804 IPR008271 GO:0004672|GO:0006468
Vifa4g01681 958 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vifa4g01681 958 Gene3D Ribonuclease Inhibitor 285 366 IPR032675 -
Vifa4g01681 958 ProSiteProfiles Protein kinase domain profile. 695 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01681 958 Pfam Leucine rich repeat 290 350 IPR001611 GO:0005515
Vifa4g01681 958 Gene3D Ribonuclease Inhibitor 367 625 IPR032675 -
Vifa4g01681 958 SMART LRR_typ_2 312 336 IPR003591 -
Vifa4g01681 958 SMART LRR_typ_2 97 121 IPR003591 -
Vifa4g01681 958 SMART LRR_typ_2 456 480 IPR003591 -
Vifa4g01681 958 SMART LRR_typ_2 432 455 IPR003591 -
Vifa4g01681 958 SMART LRR_typ_2 552 575 IPR003591 -
Vifa4g01681 958 SMART LRR_typ_2 145 169 IPR003591 -
Vifa4g01681 958 SMART LRR_typ_2 241 265 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01681 Vifa-Chr4 482430853 482437637 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01681 30 956 Receptor kinase-like Gene Family AT3G47570 35.885 0.0 557
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa4g01681 PK_Tyr_Ser-Thr 1.6e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01681 - K13420 mtr:25481440 1080.09