Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01648 ATGGAACCAGGAAATAGAGGTGCAAATGTATGTCTAGTGTGTCGACGTTTGAGAAGAAGATGTAGTGATGATTGTGAAATTGGCCAATACTTTCCATCAAATAGGAGTGATGATTTCCATAGTGCCGTAAGTCTTTTTGGATTAACTAACCTTAGGAGAATCATGGGATCAGTAGAAGAACATCAAAGACAAACTCTTGCAAACTCAATTCTCTTGGAAGGTAAAGCTTGGAGACTTTATCCAGGTAGAGGATTGTTGGGATATGAGTTGGAGTTGGATGCTCAAATTTCTTCTAATTTGAGTGAAGTAGAAACTGCTGAGAAGTTTTTGGCATATTTTAAGGCTCAAACAAATCCAAATAATGAAAGAGGAGAATCAAGCAATGATGCATTCAAAAGAAATGAAGTTGTTGAAGAGAAAGAGTTAAAGAAAGATGAAAAGGGAAAACAAGCTATCATTGAGTAA 465 0.3613 MEPGNRGANVCLVCRRLRRRCSDDCEIGQYFPSNRSDDFHSAVSLFGLTNLRRIMGSVEEHQRQTLANSILLEGKAWRLYPGRGLLGYELELDAQISSNLSEVETAEKFLAYFKAQTNPNNERGESSNDAFKRNEVVEEKELKKDEKGKQAIIE 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01648 154 Pfam Lateral organ boundaries (LOB) domain 11 106 IPR004883 -
Vifa4g01648 154 MobiDBLite consensus disorder prediction 126 154 - -
Vifa4g01648 154 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 130 - -
Vifa4g01648 154 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Vifa4g01648 154 MobiDBLite consensus disorder prediction 117 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01648 Vifa-Chr4 472841598 472842175 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01648 11 96 AS2 family AT2G19820 37.931 8.91e-17 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa4g01648 LOB 4.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01648 - - tpra:123886926 127.872