Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01621 ATGAAATTAACATCACTGTACTCCAATTCCAATCAACAATGGATATACGACGTGTTCATCAATTTTAGAGGTGAAGACACTCGCAAGAATTTCGTTTCTCATCTACACGCTGCACTCTCAAACTTGGGAGTCAACGCTTTTCTTGACAGTGACAACTTACTAAAGGAAAAAGAGCTAAGAGAAAAACTCCTAGGAGCAATAGAATCTTCTCATATATCTATTGTTGTTTTCTCTGAAAACTATACTGAATCTAGTTGGTGTCTTCATGAGCTTGAAAAAATCATGGAATGTCGCACTACTTATGGTCATGTTGTTTTCCCTGTATTTTATAACATCGATCCGTCGGTTGTGCGGCATCAAACCGGTGATTTTGGAAAAACGTTGGAATTGCGGGCTCAGAAAACGAATGAAGCTGAACTAGTAAAGACAATTGTTAAGGAAGTTTTGACAAAACTAGACAACTCGCTCTTATCTATTACTGAATATCCAGTTGGTTTAGAATCCCGTATCCAAGAAGTTATTGAGTTTATTAATGATCAATCAAACATAGTTTGCATGGCAGGGATTTGGGGAATGGGAGGATCGGGTAAAACAACCACAGCAAAAGCCATCTATAATCAAATCCACCGCAAATTTGAAGATAGAAGCTTCGTTGAAAATATTAGAGAAGTCTGTGAAAAAGATAATGACGGGATTATTCGTTTACAAGAACAACTACTCTCAGATGTCTTAAAGGTAAAGGTCAAGAAGATACATAGTATAACATCGGGGACTACTAAGATAGAGAAAAGACTTGTGAGGAAAACGGTTCTCGTTGTACTAGATGATGTGAGTACATTTGAGCAAATAAAAGCCCTGTGTGGAAATCGTAAATGGTTTGGTTCCGGAAGTGTATTAATTGTTACAACCAGAGATGTACACCTACTTAAATTACTTAAAGTTGCACATGTTTGTACAATGAAGGAAATGGGTGAAGATGATTCCCTTGAGCTTTTCTGTTGGCATGCTTTTAGAGAACCAAGTCCGAGAAAATACTTTGGTATACTCTCTAGAAATGTTGTTGCTTACTGTGGTGGATTGCCACTTGCTCTTGAAATCCTTGGGTCTTACTTATATGGAAGGACAATAAGAGAATGGGAAAGTGTATTGTCAAAACTAGAGAGGATTCCTAATGACCAAGTACAAGAGAAGCTAAAAATAAGCTATGATGGTTTAGAAGATGATATGGAAAAGGATATATTTCTTGACATATGTTGTTTCTTTATCGGCAAGGACAGAGCCTATGTTGCCAAGATACTAAATGGGTGTGGACTCTATGCTGACATTGGAATAACAGTCCTTGTTGAGCGGAGCCTTGTAAAAGTTGAAAAGAATAACAAGCTTGCAATGCATGATTTGCTAAGAGACATGGGAAGAGAAATAGTTCGTCAAAGTTCAGCAAAAAGTTCAGGAAACCGTAGTCGATTGTGGTTTCATGACGATGTACATGATGTTTTGACAAAAAATACGGGAACGGAAACGGTGGAGGGATTGGTTTTTAAGTTGCAAAGAACCGACAGAGTTTGGTTCAATACTAATTCATTCAAGGAAATGAAGAAACTGAGACTCTTACAACTTGATTGTGTTGATCTCATTGGAGATTACGGGTGTCTTTCCAATCAACTGAGATGGGTCAAATGGCAAGGATTTACTTCTTTCAACTATATACCCGATGACTTTTATCAGCAAAATCTTGTTGCTATAGACTTAAAACACAGCAATATTAGACAAGTTTGGAATGAAATGATGTTGCTGGAGAAGCTTGAAATTCTTAATCTCAGTCATTCTAAGTACTTGAAAAACAGCCCCGACTTTTCAAAGTTACCGAATCTAGAAAAGCTCATCATGAAAGATTGTCCAAACTTGTCTGACATACACCCATCTGTCGGAGATCTCAATAGACTTGTTCTGATAAATTTTAAGGATTGTACAAGTCTTAACAATCTCCCAACGAAGATATATCAATTGAAATCGTTGAAAACTCTCATTCTTTCTGGTTGTTCAAAGATTGACAATTTGGAAGAAGATGTAGTGCAAATGGAATCTTTGACAACACTGATCGCGAAAGATACAGGTGTAAAAGAGGTGCCTTATTCCATAGTAAGATCGAAAAACATCACTTATATATCCCTATGTGGATTTGAAGGATTATCACGCGATGTTTTTCCCTCTCTCATTTGGTCTTGGATGTCGCCAACAATGAATTCCTTACCCCGCATTTCCCCATTTGGAAACAAGGCTTTATCTGTAGCTTCCGTCAATGTACAGAATAATAATGTGGGATTTCTATCACCAATGGTTAGGAGCCTTTCACAACTCAGAACTGTTTGGATACAATGCCGCTCAAAGATTCAACTAACTCAAGAATTACAAAGAATTCTTGATGATCAATATGATGTAAACTTCACCAAATTGGAAACATCAAACAAATCACAAATCTCAAATCTTTCCTCGAGATCGCTTTTGATTAGAATGGGAAGTTGTCACATAGACAATGATACTTTTGACAAGAGCATATCACAGGGATTAACAGCCAATGATTCAAGTGACTTTTTCCTTCCTGGTGGCAATTATCATTCTGGGTTGGCCTATAAAGGTAAAGGACCTTCAGCACTATTTGAAGTTCCTGTTCATCAGATGAAGGGAATAATCTTATGTGTTGTTTATTCATCAATATCTGAAAACATGGGAGTTGAATGTCTTACTAGCTTCTTGATCATTAATTACACAAAGTGCACCATCAAGATATACAAGCGAGACACAGTAATGTCCTTTAATGATGAAGATTGGAAGGGTTTAACATCAAATATAGTGCCCGGAGACGAGGTGGAGATTTTTCTAGTTTTTGGACATGGATTGTTTGTTAAGGAGATCGCGGTCTATTTAGTTTATGATCAGTCGATTTCTGTGGAAGTTGAACAATCAATTATTATGGAAGTTGAGACATCGACAACTAACTTGAAAATGGATCCATTGGAGAAAGTGAACTTGCAGCCATGGCCTAGAGTTGACGTGCAGCCATCACCTAATGTGAAAGCAGATGCGGCAACGGATGCTAAAACCAATGTGTCTCTGGAAGTGAAGGTACAGTCATCACAAAAGCTCAATAAAAGTATATTTACAAGACTTCCAAAAATAATGAGGGCTTGTTTATGCTTGAACAAGCATGGAGATTAA 3216 0.3734 MKLTSLYSNSNQQWIYDVFINFRGEDTRKNFVSHLHAALSNLGVNAFLDSDNLLKEKELREKLLGAIESSHISIVVFSENYTESSWCLHELEKIMECRTTYGHVVFPVFYNIDPSVVRHQTGDFGKTLELRAQKTNEAELVKTIVKEVLTKLDNSLLSITEYPVGLESRIQEVIEFINDQSNIVCMAGIWGMGGSGKTTTAKAIYNQIHRKFEDRSFVENIREVCEKDNDGIIRLQEQLLSDVLKVKVKKIHSITSGTTKIEKRLVRKTVLVVLDDVSTFEQIKALCGNRKWFGSGSVLIVTTRDVHLLKLLKVAHVCTMKEMGEDDSLELFCWHAFREPSPRKYFGILSRNVVAYCGGLPLALEILGSYLYGRTIREWESVLSKLERIPNDQVQEKLKISYDGLEDDMEKDIFLDICCFFIGKDRAYVAKILNGCGLYADIGITVLVERSLVKVEKNNKLAMHDLLRDMGREIVRQSSAKSSGNRSRLWFHDDVHDVLTKNTGTETVEGLVFKLQRTDRVWFNTNSFKEMKKLRLLQLDCVDLIGDYGCLSNQLRWVKWQGFTSFNYIPDDFYQQNLVAIDLKHSNIRQVWNEMMLLEKLEILNLSHSKYLKNSPDFSKLPNLEKLIMKDCPNLSDIHPSVGDLNRLVLINFKDCTSLNNLPTKIYQLKSLKTLILSGCSKIDNLEEDVVQMESLTTLIAKDTGVKEVPYSIVRSKNITYISLCGFEGLSRDVFPSLIWSWMSPTMNSLPRISPFGNKALSVASVNVQNNNVGFLSPMVRSLSQLRTVWIQCRSKIQLTQELQRILDDQYDVNFTKLETSNKSQISNLSSRSLLIRMGSCHIDNDTFDKSISQGLTANDSSDFFLPGGNYHSGLAYKGKGPSALFEVPVHQMKGIILCVVYSSISENMGVECLTSFLIINYTKCTIKIYKRDTVMSFNDEDWKGLTSNIVPGDEVEIFLVFGHGLFVKEIAVYLVYDQSISVEVEQSIIMEVETSTTNLKMDPLEKVNLQPWPRVDVQPSPNVKADAATDAKTNVSLEVKVQSSQKLNKSIFTRLPKIMRACLCLNKHGD 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01621 1071 SUPERFAMILY L domain-like 478 828 - -
Vifa4g01621 1071 SMART till_3 15 159 IPR000157 GO:0007165
Vifa4g01621 1071 PRINTS Disease resistance protein signature 186 201 - -
Vifa4g01621 1071 PRINTS Disease resistance protein signature 264 278 - -
Vifa4g01621 1071 PRINTS Disease resistance protein signature 357 371 - -
Vifa4g01621 1071 PRINTS Disease resistance protein signature 667 683 - -
Vifa4g01621 1071 Pfam TIR domain 16 138 IPR000157 GO:0007165
Vifa4g01621 1071 Gene3D - 8 151 IPR035897 -
Vifa4g01621 1071 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 131 IPR035897 -
Vifa4g01621 1071 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 776 IPR044974 GO:0006952
Vifa4g01621 1071 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 156 - -
Vifa4g01621 1071 Pfam NB-ARC domain 168 399 IPR002182 GO:0043531
Vifa4g01621 1071 ProSiteProfiles TIR domain profile. 14 152 IPR000157 GO:0007165
Vifa4g01621 1071 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 417 IPR027417 -
Vifa4g01621 1071 Gene3D - 152 318 IPR027417 -
Vifa4g01621 1071 Gene3D Ribonuclease Inhibitor 503 853 IPR032675 -
Vifa4g01621 1071 Gene3D - 323 406 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01621 Vifa-Chr4 466935394 466939840 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01621 16 713 WRKY Transcription Factor Family AT4G12020 30.108 5.00e-78 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01621 - - mtr:11424959 1242.25