Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01616 ATGATGGTTCTTCTAAGTAGCTGGATTTTCAGTTATCATGTTTTTGTTAGTTTCTTGTTGCTGATTAGTTCTGGCATAACCTATGGGACTGAAACTGATATCTTCTGTTTGAAATCAATAAAAAATTCGATCCAAGATCCGAATAATTATTTGAGATCTTCGTGGAATTTCAACAATAAAACTGAAGGGTTTATCTGTAGATTTAATGGTGTTGAATGTTGGCATCCTGACGAGAATAGGGTCTTGAATCTTAAGTTATCGAATATGGGACTCAAGGGTCAGTTTCCACGCGGCATTGTTAATTGTTCGAGTTTAACAGGATTAGATCTTTCGATTAATGATCTCTCTGGAACCATTCCAGTTGATATATCTTCACTTCTAAACTACGTGACAACTCTGGATCTATCTTCAAATGAATTTTCTGGAGAGATACCTCTTAGTCTTGCAAATTGTACTTATCTGAATACCCTTAAACTTGATCAGAACCAACTTACTGGTCAAATTCCTCTACAGTTAGGCACTCTCACGCGTCTTAAGACGTTTGATGTATCCGACAATTCATTGACCGGGCAAGTTCCAACTTTCACTGACGGTAAAGTTGATGCAAATTATGCAAATAATCCAGGTCTTTGTGGATCTCTTTTATTGGGTGCTTGCAAGGCCAATGATTCCTCCAAGAGTAACACTGCAGTTATAGCGGGAGCTGCTGTTGGTGCGGTGACTCTTGCAGCGTTAGGATTGGGCGTTGTAATGTTCTTCTTTGTGCGTCGCGGTTCTTATAGAAGAAAGGAAGAAGATCCTGAAGGAAACAAATGGGCAAAAAGTATTAAAGGAACTAAAGGAATTAAGGTGTCTCTATTTGAGAAATCGATTTCGAAAATGAAATTGAGTGATCTCATGAAGGCTACTAACAACTTCAGTAATAGCAATATCATTGGGACGGGAAGAACCGGAACCGTTTACAAAGCTACTCTTGAAGACGGCACAGCATTTATGGTGAAAAGATTGCAGGAATCTCAACACTCCGAGAAAGAATTTATGTCTGAGATGGCGACACTTGGGATTGTCAAACATCGTAATCTGGTTCCTCTTTTAGGTTTTTGTATGGCCAAAAAGGAGAGGCTTTTGGTCTATAAAAACATGCCAAATGGAATGCTTCATGATCAACTACATCCTGCTGCTGGTGATTGCACCCTCGACTGGTCTTTGAGACTCAAAATCGCAATCGGAGCAGCCAAAGGATTAGCATGGCTTCATCATAGCTGCAACCCTCGGATCATCCACAGAAACATAAGCTCTAAGTGCATCTTGTTGGACGCTGAATTCGAGCCCAAAATTTCCGATTTCGGCCTTGCCAGATTGATGAACCCACTCGATACACATTTGAGTACTTTTGTAAACGGCGAATTCGGTGATTTTGGCTACGTGGCTCCTGAGTATACAAAAACTTTAGTCGCCACACCTAAAGGCGACGTATTTAGCTTTGGGACCGTGCTTCTCGAGTTGGTAACTGGCGAAAGGCCTGCAAGTGTGGCTAAAGCGCCAGAAACTTTTAAAGGAAATCTGGTAGAATGGATTGCCGAGCTTACAACAAACTCCAAACTCCACGATGCCATTGACGAATCACTAGTTAACAAAGGCGATGATAACGAGCTTTTCCAATTTCTAAAGGTTGCATGCAACTGTGTTTCAGAAACTCCAAAGGAGAGGCCAACCATGTTTGAAGTGTATCAATTCTTAAGAGCTATTGGTAGTAAGTACAATTTCACAACTGAAGATGAAATATTGATACCTGAAGATATTGGTATTGATAACATGGATGAACTTATTGTTGCTAGAGAAAGAAATAATTGA 1854 0.4018 MMVLLSSWIFSYHVFVSFLLLISSGITYGTETDIFCLKSIKNSIQDPNNYLRSSWNFNNKTEGFICRFNGVECWHPDENRVLNLKLSNMGLKGQFPRGIVNCSSLTGLDLSINDLSGTIPVDISSLLNYVTTLDLSSNEFSGEIPLSLANCTYLNTLKLDQNQLTGQIPLQLGTLTRLKTFDVSDNSLTGQVPTFTDGKVDANYANNPGLCGSLLLGACKANDSSKSNTAVIAGAAVGAVTLAALGLGVVMFFFVRRGSYRRKEEDPEGNKWAKSIKGTKGIKVSLFEKSISKMKLSDLMKATNNFSNSNIIGTGRTGTVYKATLEDGTAFMVKRLQESQHSEKEFMSEMATLGIVKHRNLVPLLGFCMAKKERLLVYKNMPNGMLHDQLHPAAGDCTLDWSLRLKIAIGAAKGLAWLHHSCNPRIIHRNISSKCILLDAEFEPKISDFGLARLMNPLDTHLSTFVNGEFGDFGYVAPEYTKTLVATPKGDVFSFGTVLLELVTGERPASVAKAPETFKGNLVEWIAELTTNSKLHDAIDESLVNKGDDNELFQFLKVACNCVSETPKERPTMFEVYQFLRAIGSKYNFTTEDEILIPEDIGIDNMDELIVARERNN 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01616 617 ProSiteProfiles Protein kinase domain profile. 306 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01616 617 FunFam Leucine-rich repeat receptor-like protein kinase 30 194 - -
Vifa4g01616 617 Pfam Leucine rich repeat N-terminal domain 32 74 IPR013210 -
Vifa4g01616 617 SUPERFAMILY L domain-like 31 195 - -
Vifa4g01616 617 Gene3D Ribonuclease Inhibitor 31 221 IPR032675 -
Vifa4g01616 617 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 83 582 - -
Vifa4g01616 617 Gene3D Transferase(Phosphotransferase) domain 1 381 598 - -
Vifa4g01616 617 SUPERFAMILY Protein kinase-like (PK-like) 284 580 IPR011009 -
Vifa4g01616 617 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 267 380 - -
Vifa4g01616 617 Pfam Protein tyrosine and serine/threonine kinase 309 580 IPR001245 GO:0004672|GO:0006468
Vifa4g01616 617 CDD STKc_IRAK 312 580 - -
Vifa4g01616 617 Gene3D Phosphorylase Kinase; domain 1 267 379 - -
Vifa4g01616 617 FunFam Leucine-rich repeat receptor-like protein kinase 381 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01616 Vifa-Chr4 466516934 466518903 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01616 15 594 Receptor kinase-like Gene Family AT3G28450 46.075 2.46e-179 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Vifa4g01616 PK_Tyr_Ser-Thr 9.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01616 - - psat:127076602 1143.26