Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01615 ATGGAGGAAGAAAAAATTATAGAGCACAAAACTGTTACCACAAAGTTTGTGAAATCTTCTCCTACACCAAAAATTGTTAGAATCTCATATACTGATAAATATGCAACAGATTCTTCATCTGAAGAAGAACAAGAACATAGCTTTGTTCAAAGTGTAGTAACAAAGAAAATGGTGAAAGAGATTATATTTCAAACATGTTCCACTCATTCTAACAAGAAAATGAATAAGAAGAAAGATGAAGGCGGAGAAAAGTACAATGTTGATGGCGAATGTGGTTTGAAACAGAAAAATGAGAGAGAAGAACAAGTCAAAAGTGTTGATCAGAAGTTCCGCGGTGTTCGAAGACGGCCGTGGGGGAGATGGGCTGCGGAGATTCGCGATCCTCGGCTGGGAAGGAGAAGATGGTTAGGAACTTATGATACAGCTGAAGAAGCTGCTTTGGTTTATGACAGAGCTGCAATTCAGTATAGAGGTGCTGATGCTGTTACAAATATTACCAAACCGCCGCAGAAGCAGAAACATCATGAAGAAGAGAAAGAACAAAAGAGAAAATCGAAAAATGTTAATGTTAATGTTGTTGGTGATAAAGATACTTTTGATAAGGATAGTATTGTTAGTTCATGTTCTTCATCTTTTACTGAAATTTGGAGTGAAAGGAAAAGTGTGCAAGAATGGATTAGAGAGATAACAGGAGAAGAATATTTAGATGAGTCATTTGGTTCATTTTCTTCTTACAATGAAGATATTTTTCCAACAATAGTTTCTAATGAGAGTTCTTGCATGGTTGATAATATTCCTTTTCATCTTGAAGAGGATTTTGAGTCATGTAAATGGGAAGTTGATAATTATTTCAATGACCCTTTATCAATGCATTGA 876 0.3539 MEEEKIIEHKTVTTKFVKSSPTPKIVRISYTDKYATDSSSEEEQEHSFVQSVVTKKMVKEIIFQTCSTHSNKKMNKKKDEGGEKYNVDGECGLKQKNEREEQVKSVDQKFRGVRRRPWGRWAAEIRDPRLGRRRWLGTYDTAEEAALVYDRAAIQYRGADAVTNITKPPQKQKHHEEEKEQKRKSKNVNVNVVGDKDTFDKDSIVSSCSSSFTEIWSERKSVQEWIREITGEEYLDESFGSFSSYNEDIFPTIVSNESSCMVDNIPFHLEEDFESCKWEVDNYFNDPLSMH 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01615 291 MobiDBLite consensus disorder prediction 166 185 - -
Vifa4g01615 291 Gene3D AP2/ERF domain 108 166 IPR036955 GO:0003700|GO:0006355
Vifa4g01615 291 FunFam Ethylene-responsive transcription factor 2 108 167 - -
Vifa4g01615 291 Pfam AP2 domain 109 158 IPR001471 GO:0003700|GO:0006355
Vifa4g01615 291 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 203 - -
Vifa4g01615 291 MobiDBLite consensus disorder prediction 169 185 - -
Vifa4g01615 291 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Vifa4g01615 291 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Vifa4g01615 291 SUPERFAMILY DNA-binding domain 109 165 IPR016177 GO:0003677
Vifa4g01615 291 SMART rav1_2 109 172 IPR001471 GO:0003700|GO:0006355
Vifa4g01615 291 MobiDBLite consensus disorder prediction 72 93 - -
Vifa4g01615 291 MobiDBLite consensus disorder prediction 69 93 - -
Vifa4g01615 291 CDD AP2 108 164 IPR001471 GO:0003700|GO:0006355
Vifa4g01615 291 ProSiteProfiles AP2/ERF domain profile. 109 166 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01615 Vifa-Chr4 464650403 464651278 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01615 5 192 AP2-EREBP Transcription Factor Family AT4G27950 42.640 8.73e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa4g01615 AP2 4.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01615 - - tpra:123886940 314.694