Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01614 ATGGAGGAAGAAAAAATCATTGAGCTCAAAACTGTTACCACAAAGTTTGTGAAATCTTCTTCTACACCAAAAATTGTTAGAATCTCATATACTGATAAATATGCAACAGATTCTTCATCTGAAGAAGAACAAGAAAATAGCTTTATTCAACGTGTAGTAACAAAGAAAATGGTGAAAGAGATTATATTTCAAACATGTTCCACTCATTCTAACAAGAAAATCAATAAGAAGAAACAGGAAGGCGGAGAAAAGTACAATGTTGATGGTGAATGTGGTTTGAAAGAGAAAAATGAGAGACAAGAACAAGTCAAAAGTGTTGATCAAAAGTTCCGCGGCGTTCGAAGACGGCCGTGGGGGAGATGGGCTGCGGAGATTCGCGATCCTCGGCTCGGAAGGAGAAGATGGTTAGGAACTTATGATACAGCTGAAGAAGCTGCTTTGGTTTATGACAGAGCTGCAATTCAGTATAGAGGTGCTGATGCTGTTACAAATATTATCGAACCGCCGCAGAAGCAGAAACATCGTGAAGAAGAGAAAGAACAAAAGAGAAAATCGAAAAATGTTGGATTAGTATGTGACAAAAATGTTGATGTTAATGTTGTTGGTGCTAATAATCATGTGGATAAGGATTGTAATGGCAGTTCATGTTCTTCATGTGTTACTGAAATTTGGAGTGAAAGGAAAAGTGTGACAGAATGGATTAAAGAGATATCAGGAGAAGAATATTTAGATGAGTCATTTGGTTCATTTTCTTCTTACAATGAAGATGGTTTTCCCACAATAGTTTCTAATGAGAGTTCTTGCATGGTGGATAATATTCCTTTTCATCTTGAAGAGGATTTTGAGTCATGTAAATGGGAAGTTGATAATTATTTCAATGGCCCTTTATCAATCCATGGAAATTGA 906 0.3631 MEEEKIIELKTVTTKFVKSSSTPKIVRISYTDKYATDSSSEEEQENSFIQRVVTKKMVKEIIFQTCSTHSNKKINKKKQEGGEKYNVDGECGLKEKNERQEQVKSVDQKFRGVRRRPWGRWAAEIRDPRLGRRRWLGTYDTAEEAALVYDRAAIQYRGADAVTNIIEPPQKQKHREEEKEQKRKSKNVGLVCDKNVDVNVVGANNHVDKDCNGSSCSSCVTEIWSERKSVTEWIKEISGEEYLDESFGSFSSYNEDGFPTIVSNESSCMVDNIPFHLEEDFESCKWEVDNYFNGPLSIHGN 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01614 301 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Vifa4g01614 301 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Vifa4g01614 301 Gene3D AP2/ERF domain 108 166 IPR036955 GO:0003700|GO:0006355
Vifa4g01614 301 ProSiteProfiles AP2/ERF domain profile. 109 166 IPR001471 GO:0003700|GO:0006355
Vifa4g01614 301 CDD AP2 108 164 IPR001471 GO:0003700|GO:0006355
Vifa4g01614 301 FunFam Ethylene-responsive transcription factor 2 108 167 - -
Vifa4g01614 301 SUPERFAMILY DNA-binding domain 109 165 IPR016177 GO:0003677
Vifa4g01614 301 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 208 - -
Vifa4g01614 301 SMART rav1_2 109 172 IPR001471 GO:0003700|GO:0006355
Vifa4g01614 301 Pfam AP2 domain 109 158 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01614 Vifa-Chr4 464582153 464583058 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01614 5 180 AP2-EREBP Transcription Factor Family AT4G27950 44.324 5.79e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa4g01614 AP2 4.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01614 - - tpra:123886940 322.013