Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01613 ATGGATGAAGATCAAGAGATGGAGAAATTCGGAATGGAGAACGATTTTGAAGGTGGTAGATGGAAAGGTGGTGAGTTCTACTACCGAACGCGTAAAGAGAAACGAACTCAAACCAAAGATGATGTTCTCTATGGAGTTTTTGCTGATTCCGAAGATGACGACGATGATGATTATTCTAGTAGAAAGCGAAGGAAAAACCGTGATTTATCGAAGAAACAAGACCTCACTAAGCCGGTGAATTTCATTTCTACTGGTACTTTGCCTAATCAGGATAAGGTTGATGAAAATCCAAAAGAGAATGATGAGAAGGATAGTTATAATAGTGAAGATAGGTCTGAGTTAGGGTTAGGTTTTGGGTCTGCTAGTACGTCTGGTTTAGGTTTTAATTATGGTCGTGGTGCTGCAAATGGTTTTGATAGGAATGGTTCTGATGATAATGATAATGATAATGATAACAGTGATGATAAATTTTTGCCTACTGCGTTTGGGAAGAAGCTTAAGGAGGGGGCAATGAGGAGGGAGAAGGAGAGATTGGAGAAGAAGAAGAAGGTGCAGAAGCAGGGGCTGGGTTTAGGTCATGAGGGATCTGTGGATGTTGGGAAATTTGAGAGTCATACGAAGGGGATTGGAATGAAGCTGCTGGAGAAGATGGGTTATAAAGGGGGCGGTCTTGGGAAGAATGAGCAGGGTATTTTAAATCCTATTGAGGCGAAATTGAGGGCTAAGAATTCTGGTCTTGGATTTAATGAATCAAAGGAGAATAAAACGGCGTTGCCTGCTTTGCAGACAGAGAAGACTGTACAGGGAGGAGCCGTGCAGCCTACAGTTGGAAGAATGAAAGAACGGTCCTGGTTAAAGCAGAAGAAGAAAAAGAAAGAAGAGGAAGAGTATGTTACTGCTGAGGAGTTGTTGGCGAGCAAGCAAGAAGAAGATTCGGAGGTTGTTCAGAAGATTTATGATATGAGGGGGCCACAGGTTCGAGTGTATACAAATTTGTCTGATTTGAATGCTGAGGAGAAAGCAAAGGAAAATGATGTCCCAATGCCTGAACTTCAGCATAACATAGCGCTAATAGTTCGGTTGGCTGAGGCTGACATCCAAGAGATTGATAGAGATTTGAGGAAAGAGAGGGATATAGCACTTAGTTTGAAAAAAGAAAAAGAAAATTTGGAAGCTGAGGCAGCATTTCAAAAGAAACAGCTAAATAATTCTGAGAAAATAATGAGTGTGCTGGACCGAGTCGGAGAAGAGAACACCTTAGGAACATTAACGTTGGATTCCCTTGCTCAATGCTTTAGGGACATGCTCAAAAGATATCCTGAGGACTATAAGTTGTATAACCTGTCATGCATTGCATGCTCATATGCTCTACCTTTGTTTATTAGAGTGTTCCAAGGATGGGACCCTCTTCGAAACCCATCACATGGTTTGGAATTGGTATCACAGTGGAAGATATTGCTTCAAGGAGATGATTGTTTTGATATATGGGAGACATCATCACCTTATATTCACTTGGCTTCGGAGGTTGTATTACCAGCTGTTAGAATATCTGGTATCAATACCTGGCATGCCCGGGATCCTGAGCCGATGCTACGGTTTCTGGAGTCATGGGAAAAGTTGCTACCTTCTTCAGTTCTCGCTACTATATTAGACACCATAGTCATGCCGAAACTATTGAGTGCTGTAAGTACTTGGGAACCACATCTTGAGACCATTCCTATCCACACATGGGTGCATCCGTGGCTGCCTCTGCTAGGGCACAAGCTGGAGGGTATCTACCAGACAATTCGTTTCAAATTGAGTACTGTTCTTGGTGCATGGCACCCAAGTGATGGTTCTGCGTATGCTATATTGTCTCCTTGGAAGACTGTATTTGATTCTGATAGTTGGCAACAACTTATGCACCGTTTTATTGTACCAAAGCTGAAGACTGTCTTGCAAGATGAATTCCAAGTGAACCCGGCAAGTCAGAATCTCGATCAATTTTATTGGGTAATGAATTGGGCTTCGGCCATTCCAATTCATATGATGGTTGACACGATGGAGACCTTCTTTGCCAAGTGGCTTGCGGTTTTGTATCATTGGTTGTGCTCAAATCCTAACTTTGATGAAGTTACAAAATGGTATTTGGGCTGGAAAGAACTTATTCCAAAAGAACTTTTGGCCAATGAAAGCATTCGATACAAGCTCAATAGCGGTCTTGAAATGATGAACCAGGCTGTTGATGGTATGAAAGTGGCGCAACCTGGTTTGAAGGAGAAGATAAGCTATATTAAGGTAAGTGAGCAGAGGAAATTTGAGACTCAGCAGAAAGCAGCAGCCTCTGCTCAACAACAGGCTGCTGCAAACTTGGGCGGTGCTGTCAATTCAGATGGTGTTAGTGAAATGAGTGTGAAAGAACTCATTGAGGCCTATGCTCGGGATCACGGTTTGCTGTTCAAACTTAAACCTGGTAGAATGCACAACGGTCATCAAATATATGGGTTTGGCAATGTCAGCATAATAATCGACTCTCAAAATCTAAAGGTCTACGCCCAAAATGAGGAAACATGGTCTTTAGAAACTCTTGAACGATTGCTAGAGTTACATAATAAGTCTCTCAGTAAAAGACGTTGA 2616 0.4213 MDEDQEMEKFGMENDFEGGRWKGGEFYYRTRKEKRTQTKDDVLYGVFADSEDDDDDDYSSRKRRKNRDLSKKQDLTKPVNFISTGTLPNQDKVDENPKENDEKDSYNSEDRSELGLGFGSASTSGLGFNYGRGAANGFDRNGSDDNDNDNDNSDDKFLPTAFGKKLKEGAMRREKERLEKKKKVQKQGLGLGHEGSVDVGKFESHTKGIGMKLLEKMGYKGGGLGKNEQGILNPIEAKLRAKNSGLGFNESKENKTALPALQTEKTVQGGAVQPTVGRMKERSWLKQKKKKKEEEEYVTAEELLASKQEEDSEVVQKIYDMRGPQVRVYTNLSDLNAEEKAKENDVPMPELQHNIALIVRLAEADIQEIDRDLRKERDIALSLKKEKENLEAEAAFQKKQLNNSEKIMSVLDRVGEENTLGTLTLDSLAQCFRDMLKRYPEDYKLYNLSCIACSYALPLFIRVFQGWDPLRNPSHGLELVSQWKILLQGDDCFDIWETSSPYIHLASEVVLPAVRISGINTWHARDPEPMLRFLESWEKLLPSSVLATILDTIVMPKLLSAVSTWEPHLETIPIHTWVHPWLPLLGHKLEGIYQTIRFKLSTVLGAWHPSDGSAYAILSPWKTVFDSDSWQQLMHRFIVPKLKTVLQDEFQVNPASQNLDQFYWVMNWASAIPIHMMVDTMETFFAKWLAVLYHWLCSNPNFDEVTKWYLGWKELIPKELLANESIRYKLNSGLEMMNQAVDGMKVAQPGLKEKISYIKVSEQRKFETQQKAAASAQQQAAANLGGAVNSDGVSEMSVKELIEAYARDHGLLFKLKPGRMHNGHQIYGFGNVSIIIDSQNLKVYAQNEETWSLETLERLLELHNKSLSKRR 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01613 871 MobiDBLite consensus disorder prediction 56 74 - -
Vifa4g01613 871 MobiDBLite consensus disorder prediction 142 188 - -
Vifa4g01613 871 Coils Coil 290 310 - -
Vifa4g01613 871 MobiDBLite consensus disorder prediction 92 110 - -
Vifa4g01613 871 MobiDBLite consensus disorder prediction 1 22 - -
Vifa4g01613 871 MobiDBLite consensus disorder prediction 46 201 - -
Vifa4g01613 871 MobiDBLite consensus disorder prediction 76 91 - -
Vifa4g01613 871 PIRSF TFIP11 1 866 IPR024933 -
Vifa4g01613 871 Coils Coil 373 407 - -
Vifa4g01613 871 Pfam G-patch domain 206 247 IPR000467 GO:0003676
Vifa4g01613 871 Pfam GC-rich sequence DNA-binding factor-like protein 425 692 IPR022783 -
Vifa4g01613 871 SMART G-patch_5 204 249 IPR000467 GO:0003676
Vifa4g01613 871 PANTHER TUFTELIN-INTERACTING PROTEIN 11-RELATED 1 859 IPR045211 GO:0000390
Vifa4g01613 871 Pfam Tuftelin interacting protein N terminal 4 108 IPR022159 -
Vifa4g01613 871 ProSiteProfiles G-patch domain profile. 206 251 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01613 Vifa-Chr4 464555880 464558495 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01613 209 265 C2H2 Transcription Factor Family AT5G26610 47.368 2.31e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01613 K13103 - gmx:100781621 1292.72