Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01581 ATGCCAAGCGAAGCAAACCAAGGTTTCTATTTGCTTGGTTTAGAGAACACAACTCCAACTTTTGCATCAGCAATACAAAATTTTGTCCCTGCCATAACATTTCTCATGGCTGTCATATTAAGGATAGAGCAAGTGAGATTGAATAGAAAAGATGGATTAGCTAAAGTTGCAGGAACAATATTCTGTGTAATTGGTGCAACAGTGATTACATTATACAAAGCGCCTATTCTTAAGAAGTATCCTGCTCGTCTTTCTGTCACTTCTTATACGTGTTTCTTTGGTCTCTTGCAATTTCTTGTTATTGCTTTGGTTTGTGAAAGAAATTCTCAAGCTTGGCTATTTCACTCGGGTGGTGAAGCTTTCACTATTCTATACGCCGGAGTGGTGGCATCTGGAATTGCTTTTGCAGTACAAATATGGTGTATTGATAGAGGAGGACCAGTGTTTGTTGCTGTTTATCAACCTGTTCAAACTTTTGTTGTTGCTATTATGGCTTCTATTGCTTTAGGAGAAGAGTTCTACTTGGGAGGGACAGAATTTACTAAAGTAACTCTGCCACCAATAGATAAAAAACGACCCTTCCAAACCGAGACTTCAACTCCAATTGTCCAGCTTCTGAACAACGGAAATTTAGTGATCAGAGATGAGAAAGACAGTTCAGCTGATGAAGATAGTTTCTTGTGGCAGAGCTTTGACTATCCTACTGATACATTATTACCAGAAATGAAGAATGGATGGGACAAGAAAACCGGTATTCTTAGAATATTTACTGCATGGAAAAACTGGGACGATCCATCTTCAGGTGACTTTACTGCATCCATGAGACTTACGAACAATCCTGAAACGGCTATTTGGAAGGGCTCGACTGAGTTCTATAGATCAGGGCCTCTGACTGGTGGTACGTCTAGTGGAGCTTATGAGATGAAGGTTAACCCACTTACTAATTTAGAGCTTGTAAACAATGAAGAGCAAGTGTATTATATGTACACCCTAAAGAACAAATCTGTGATTTCCATAATTGTTTTATCATGCATAAGCCAATCTGTGATTTCCAAATCTAATAATTAA 1068 0.3858 MPSEANQGFYLLGLENTTPTFASAIQNFVPAITFLMAVILRIEQVRLNRKDGLAKVAGTIFCVIGATVITLYKAPILKKYPARLSVTSYTCFFGLLQFLVIALVCERNSQAWLFHSGGEAFTILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVAIMASIALGEEFYLGGTEFTKVTLPPIDKKRPFQTETSTPIVQLLNNGNLVIRDEKDSSADEDSFLWQSFDYPTDTLLPEMKNGWDKKTGILRIFTAWKNWDDPSSGDFTASMRLTNNPETAIWKGSTEFYRSGPLTGGTSSGAYEMKVNPLTNLELVNNEEQVYYMYTLKNKSVISIIVLSCISQSVISKSNN 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01581 355 Pfam EamA-like transporter family 83 175 IPR000620 GO:0016020
Vifa4g01581 355 PANTHER WAT1-RELATED PROTEIN 6 75 IPR030184 GO:0016020|GO:0022857
Vifa4g01581 355 SUPERFAMILY alpha-D-mannose-specific plant lectins 199 265 IPR036426 -
Vifa4g01581 355 Pfam D-mannose binding lectin 195 260 IPR001480 -
Vifa4g01581 355 SUPERFAMILY Multidrug resistance efflux transporter EmrE 98 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01581 Vifa-Chr4 459599640 459603101 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01581 5 177 Nodulin-like Gene Family AT1G75500 60.088 1.97e-87 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01581 - - jre:109008277 289.271