Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01580 ATGAAAAAAACAGGTAGCAGTGTCTGTTTGGTGTTACTTGTTCACATTGTGGTGACAAATTCAGCGCCAGAAAGTGGCATTGTAACAAAAATTCCAGGTTTCAATGGAACTATACCTTCCAAGCATTACGCTGGCTATGTAACTCTGGATGAAAAAAACTTGTATTACTATTTTGTTGAGTCACAAGGTAATCCTCTTCAGGATCCAGTTGTTCTTTGGCTTAATGGTGGACCTGGTGGCTCTAGCTTTGATGGCTTCGTCTATGAACATGGCCCTTTCAATTTTGAAGCAGCAAACACTCAGGGAAGCTTGCCAATTCTGCATCTCAATCCATACAGCTGGACCAAGGTTTCCAGTATTATATATTTGGACTCTCCTGCTGGCGTTGGCTTTTCTTATTCTAACAATGAAACTGATTATGTGACCGGAGACATAAAGACTGCTTCTGATTCCCATGCCTTTCTCCTTAAGTGGTTTGAACTATATCCTGAGTTCCTTTCGAATCCTTTCTTTATTGCTGGAGAGTCATATGCCGGAGTTTATGTGCCTACTATTGCCTATGAAGTAATGAAAGGAATTGATGCGGATGTGAAGCCCAAACTGAATTTTAAGGGTTACATGGTTGGAAATGGCGTTACAGATGAACTAATTGATGGCAATGCTCTTGTTCCATTTGTACATGGGATGGGCCTTATCCCAGATGAATTGTTTGAGGAGGCTAACCACGAGTGTGATGGGAATTTCTATAAACCGCTCAATGAAAATTGTACAAACAAGCTTGCGAAAATTGATGAGGACATTGCTGGGTTGAACTTATATAACATTCTAGAACCATGCTATCATGGCACAGAGACAGACAAGGTTATCACTACTTATGGTAAGCTTCCGTCTAGTTTCCGCAAGTTAGGTGAGACTGAGAAACCTCATCTTGTAAGGAAAAGAATGTTCGGCCGTGCTTGGCCCCTAAGAGCCCCTGTCAGAGACGGAATCGTACCCTCTTGGTCGCAACTTACCAATAGCATCAATGTTCCATGCTTAGATGTCAGCGTTGCATACGTTTGGTTGAACAATGAACAAGTCAGGAAAGCAATTCACACTGCAGAGAAAAGTGTAGTCAGTAGTTGGGAATTTGTTTCGGACAAAATTTCCTACGATCATGACGCTGGAAGCATGATTAAGTACCACAAGAACCTAACTTCCAGAGGATACCGAGCTCTTATATTCAGCGGTGACCATGACATGTGTGTTCCATTTACGGGCAGTCAAGCATGGACGAGATCAATGGGATACAAGATTGTTGATGAATGGAGGCCTTGGTTATCCAATGGTCAAGTTGCTGGCTTCACTCAAGGATATGACAACAATCTTACTTTTCTGACCATAAAGGGAGCTGGGCATACTGTTCCAGAATACAAGCCACAAGAAGCACTGGAATTTTACAAACGTTTTCTTGCTGGATTGCCAATATGA 1470 0.4204 MKKTGSSVCLVLLVHIVVTNSAPESGIVTKIPGFNGTIPSKHYAGYVTLDEKNLYYYFVESQGNPLQDPVVLWLNGGPGGSSFDGFVYEHGPFNFEAANTQGSLPILHLNPYSWTKVSSIIYLDSPAGVGFSYSNNETDYVTGDIKTASDSHAFLLKWFELYPEFLSNPFFIAGESYAGVYVPTIAYEVMKGIDADVKPKLNFKGYMVGNGVTDELIDGNALVPFVHGMGLIPDELFEEANHECDGNFYKPLNENCTNKLAKIDEDIAGLNLYNILEPCYHGTETDKVITTYGKLPSSFRKLGETEKPHLVRKRMFGRAWPLRAPVRDGIVPSWSQLTNSINVPCLDVSVAYVWLNNEQVRKAIHTAEKSVVSSWEFVSDKISYDHDAGSMIKYHKNLTSRGYRALIFSGDHDMCVPFTGSQAWTRSMGYKIVDEWRPWLSNGQVAGFTQGYDNNLTFLTIKGAGHTVPEYKPQEALEFYKRFLAGLPI 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01580 489 Gene3D alpha/beta hydrolase 20 310 IPR029058 -
Vifa4g01580 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 158 183 IPR001563 GO:0004185|GO:0006508
Vifa4g01580 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 456 469 IPR001563 GO:0004185|GO:0006508
Vifa4g01580 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 123 133 IPR001563 GO:0004185|GO:0006508
Vifa4g01580 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 110 122 IPR001563 GO:0004185|GO:0006508
Vifa4g01580 489 FunFam Carboxypeptidase 21 302 - -
Vifa4g01580 489 Pfam Serine carboxypeptidase 32 485 IPR001563 GO:0004185|GO:0006508
Vifa4g01580 489 SUPERFAMILY alpha/beta-Hydrolases 28 488 IPR029058 -
Vifa4g01580 489 ProSitePatterns Serine carboxypeptidases, serine active site. 172 179 IPR018202 GO:0004185
Vifa4g01580 489 ProSitePatterns Serine carboxypeptidases, histidine active site. 456 473 IPR033124 GO:0004185
Vifa4g01580 489 FunFam Carboxypeptidase 391 486 - -
Vifa4g01580 489 Gene3D - 341 488 - -
Vifa4g01580 489 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 29 473 IPR001563 GO:0004185|GO:0006508
Vifa4g01580 489 FunFam Carboxypeptidase 344 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01580 Vifa-Chr4 459590542 459593034 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01580 348 489 Calmodulin-binding Proteins AT2G22960 46.479 1.63e-41 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01580 K16296 - gmx:100792057 818.15