Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01578 ATGAAAACAACATGCAGCAGTGTCTGTTTGGCGTTACTTCTTCAATTTTATCTGAGCATTGTGGTGACAAATTCAGCACCAGAAAGTGCCATTGTAACACAGATTCCAGGTTTCAATGGAACAATACCTTCTAAGCATTATGCTGGGTACGTAACTGTGGATGAAAATCATGGAAGAAGCTTGTATTACTATTTTGTTGAGTCACAAGGTAATCCTTCTCAGGATCCAGTTGTTCTTTGGCTTAATGGTGGACCTGGTTGCTCTAGCTTTGATGGTTTCATCTATGAACATGGTCCTTTCAATTTTGAAGCAGCAAAAACTAAGGGAAGCCTGCCAACTCTGCATCTCAATCCATACAGCTGGACCAAGGTTTCCAGTATTATATATTTGGACTCTCCTGCTGGCGTTGGCTTTTCTTATTCTAACAATGAAACTGATTATGTAACCGGAGACATAAAGACTGCTTCTGATTCGCATGCCTTTCTCCTTAAGTGGTTTGAACTATATCCCAAGTTCCTTTCCAATCCTTTCTTCATTGCTGGAGAGTCATATGCCGGAGTTTATGTGCCTACTCTTGCCTATGAAGTAATGAAAGGAATTGATGCATATGTGAAGCCCAAACTGAATTTTAAGGGTTACATGGTTGGAAATGGTGTTACAGATGAACTAATTGATGGCAATGCTCTTGTTCCATTTGTACATGGGATGGGCCTTATCCCAGATGAATTGTTTGAGGAGGCTAACCACGAGTGTAACGGAAATTTCTATAATTCGCTCAGTGATAATTGTACAAACAAGCTTGCGAAAATTGATGAGGACATTGCTGGGTTGAACATATATAACATTCTAGAACCATGCTATCATGGCACTGAGGCAGACAAGATTATCACCACTTATGCTAAGTTGCCGTCTAGTTTCCGGAAGTTAGGTGAAACTGAGAAACCTCATCTTGTGAGGAAGAGAATCTTCGGCCGTGCTTGGCCACTAAGAGCACCTGTCAGAGACGGAATCGTACTCACTTGGTCGCAACTTACAGACAGCAACAATGTTCCATGCGTAGATGGCACCGTTGCAGACGCATGGTTGAACAATGAAGAAGTCAGGAAGGCAATTCACACTGCAGAGAAAAGTGTGGTCAGTAGTTGGGATTTATGCACAGACAAAATTTCCTACGATCATGACGCTGGAAGCATGATTAAGTACCACAAGAACCTAACTTCCAAAGGATACCGAGCTCTTATATTCAGTGGTGATCATGACATGTGTGTTCCATTTACGGGGAGTCAAGCATGGACGAGATCAATCGGATACAAGATTGTTGATGAATGGAGGCCTTGGTTATCCAATGGTCAAGTTGTCGGCTTCACTCAAGGATATGACAACAATCTTACTTTTCTGACCATAAAGGGAGCTGGGCATACTGTTCCAGAATACAAGCCACAAGAAGCACTGGAATTTTACAAACGTTTTCTTGCTGGATTGCCAATATGA 1491 0.4185 MKTTCSSVCLALLLQFYLSIVVTNSAPESAIVTQIPGFNGTIPSKHYAGYVTVDENHGRSLYYYFVESQGNPSQDPVVLWLNGGPGCSSFDGFIYEHGPFNFEAAKTKGSLPTLHLNPYSWTKVSSIIYLDSPAGVGFSYSNNETDYVTGDIKTASDSHAFLLKWFELYPKFLSNPFFIAGESYAGVYVPTLAYEVMKGIDAYVKPKLNFKGYMVGNGVTDELIDGNALVPFVHGMGLIPDELFEEANHECNGNFYNSLSDNCTNKLAKIDEDIAGLNIYNILEPCYHGTEADKIITTYAKLPSSFRKLGETEKPHLVRKRIFGRAWPLRAPVRDGIVLTWSQLTDSNNVPCVDGTVADAWLNNEEVRKAIHTAEKSVVSSWDLCTDKISYDHDAGSMIKYHKNLTSKGYRALIFSGDHDMCVPFTGSQAWTRSIGYKIVDEWRPWLSNGQVVGFTQGYDNNLTFLTIKGAGHTVPEYKPQEALEFYKRFLAGLPI 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01578 496 FunFam Carboxypeptidase 398 493 - -
Vifa4g01578 496 FunFam Carboxypeptidase 351 495 - -
Vifa4g01578 496 Gene3D - 348 495 - -
Vifa4g01578 496 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 33 480 IPR001563 GO:0004185|GO:0006508
Vifa4g01578 496 Gene3D alpha/beta hydrolase 24 319 IPR029058 -
Vifa4g01578 496 ProSitePatterns Serine carboxypeptidases, histidine active site. 463 480 IPR033124 GO:0004185
Vifa4g01578 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 129 IPR001563 GO:0004185|GO:0006508
Vifa4g01578 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 190 IPR001563 GO:0004185|GO:0006508
Vifa4g01578 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 140 IPR001563 GO:0004185|GO:0006508
Vifa4g01578 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 463 476 IPR001563 GO:0004185|GO:0006508
Vifa4g01578 496 FunFam Carboxypeptidase 25 309 - -
Vifa4g01578 496 SUPERFAMILY alpha/beta-Hydrolases 32 495 IPR029058 -
Vifa4g01578 496 ProSitePatterns Serine carboxypeptidases, serine active site. 179 186 IPR018202 GO:0004185
Vifa4g01578 496 Pfam Serine carboxypeptidase 36 492 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01578 Vifa-Chr4 459527461 459535312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01578 357 496 Calmodulin-binding Proteins AT2G22960 47.143 4.13e-42 146