Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01575 ATGGCTTCCTATCTGCTTCTCTTCCTCCTCCACTCACTGATTCTTCAATCCATCAGTGTTGTAGCTCAAACCAAAAGTACTATAGCCATTGGTGATTCTCATACTGCAGATACCAACACCCCTCCATGGTTACTTTCACCTTCTGGCGACTTTGCCTTTGGTTTTCTTCCACTTAAAAACACTGATATGTTTTTGCTTTCCATTTCGTATGCCAAAATTTCTGATAAAACTGTTGTGTGGTATGCTAATAGAGACAGTCCCGCTCCAAAAGGGTCAAAAGTTGAACTCAATTCCAAAGATGGGTTGGTGCTAACTTCTCCAAATGGTGACAGGTTGTGGAATACCGAGGGACTCAACAATGGAGTTTCCCATGGTGTTTTCAACGACACTGGCAACTTCGTGCTTGAGGATGGTGATTTCAACAGTCTTTGGGAAACTTTCAAGTTTCCTAGTGACACCTTGTTGCCTTCTCAGGTAGTTGAAAAAGGTGGAAAGCTTTCTTCAATGCTTAAGGAGACAGATTTCAGTAGAGGAAGGTTTGAGCTCCTTTTACAAAGTGATGGTAATCTTGTTATGCATTCTATTAATTTGCCATCTGGTTATACTAATGAAAATTACTATGAAAGTCAAACTGTTGGGTCCAATACATCAAGTGCTGGAACTCAATTGGTCTTTGACAGATCAGGGTACTTGTATGTCCTGGGAGAGAACAGTGAGAAATACAATGTTTCAGAAGAAAAGAGTAAAGTCTCTACCACAGATTTTTATCTTAGAGCAACTCTTAATTTTGATGGAGTGTTCACACTTTACAAGCACCCAAAGAGTTCAACAAAGAGTGAAGGTTGGACCACAGTATGGTCCAAACCTGATAATATATGTCTTTATACTGTCAGTTCTGGTAGTGGTGTTTGTGGATACAATAGCTTCTGCACTTTGGGACAGGATAAGAGACCAACGTGTCAGTGTCCAAAAAGTTACTCTCTAGTTAATCCTGATGATCCATATGGTAGCTGCAAGCCAGATTTTATACAAGGATGTGAAGAAGATGAACTGAGTAAAAGAAAGGATCTCTATGACTTTGAGGTTTTGATTAACACTGATTGGCCTTTCTCAGATTCTGTGCTTCAAAGGCCTTTTACTGAAGAACTGTGTAAAGAAGCTTGTATGGGAGATTGCATGTGTTCTGTGGCTATTTTCAGGTTAGGTGATAGTTGTTGGATGAAGAAGTTACCACTCTCAAATGGGAAAGTTGATCCAACACTTAATGGTGCTAAGGCTTTCTTGAAAGTGAGAAAAGATAATACCTCCCTCCAGTCCTTTGATTTTCCTCCATTTCCAATCATTGCGAACAAGAATAATAATAGGGAAACGTTGGTTTTGGTTGTTTCTGTGCTTTTTGGTAGCTCTGCTATTCTCAATGCTGTATTGCTTGTAGCAATATGTTTCAGCACCTCCATGATTGTTCAGTACAAGAAGAAGCTTAGAAGAGTTAGCAGAAGTGAAACTAGTGTTGAAACCAATTTGCGTTGCTTCACTTATGAAGAGCTTGAAGAAGCTACTAATGGATTTGACAAAGAGCTAGGAAGGGGAGCTTTTGGTATAGTTTATGAAGGAGTCGTCAACAACAACACATGTTCCGAAACTCGTGTGGCTGTGAAAAAGTTGAACAATTTTTTGTTGGATCAAGCTCATAGAGAATTCAGGAATGAACTGAATGTCATTGGTCTCACTCATCATAAGAACTTAGTTCGTTTACTTGGATTTTGTGAGGGTGGAAGTGAAAGATTGCTTGTTTATGAGTACATGAGCAATGGCACTTTGGCAAGTTTACTTTTCAATGCTGATGAGAAACAGAAACCAAGTTGGAAACTAAGGCTTGAACTTGCAATAGGAATAGCAAGGGGACTTGTGTATTTACATGAAGAGTGCATTACTAGGATCATCCACTGTGACATAAAGCCTCAAAATATACTTCTTGATGATTACTTCAATGCAAGAATTTCTGACTTTGGACTAGCCAAGTTGATGAACATGAATCAAAGCAAAACCAACACTGGCATTAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTTAAGAACATGCCTATCACAGCTCAAGTGGATGTGTATAGTTATGGAGTAGTGCTACTTGAGATTATTTCATGTAGAAGATGTGTTCAAGAAATGGAACAAGAAGATGAAGAGAAAGCAATATTAACTGACTGGGCTTATGATTGCTACAAGGATGGTGCTGTAGATGCATTGGTTGAGGGTGACAATGAGGCATTGGATGACAAAGAAAAGTTGGAGAAATTGGTAATGATTGCAATTTGGTGTGTTCAAGAAGATCCATCACTTAGACCAAGCATGAGAAATGTGATACATATGCTTGAAGGTACTGTTGAAGTGCAAGTTCCACCATACCCCTCACAAATTAGTATTCAATATTCTCTAATTTAG 2463 0.3902 MASYLLLFLLHSLILQSISVVAQTKSTIAIGDSHTADTNTPPWLLSPSGDFAFGFLPLKNTDMFLLSISYAKISDKTVVWYANRDSPAPKGSKVELNSKDGLVLTSPNGDRLWNTEGLNNGVSHGVFNDTGNFVLEDGDFNSLWETFKFPSDTLLPSQVVEKGGKLSSMLKETDFSRGRFELLLQSDGNLVMHSINLPSGYTNENYYESQTVGSNTSSAGTQLVFDRSGYLYVLGENSEKYNVSEEKSKVSTTDFYLRATLNFDGVFTLYKHPKSSTKSEGWTTVWSKPDNICLYTVSSGSGVCGYNSFCTLGQDKRPTCQCPKSYSLVNPDDPYGSCKPDFIQGCEEDELSKRKDLYDFEVLINTDWPFSDSVLQRPFTEELCKEACMGDCMCSVAIFRLGDSCWMKKLPLSNGKVDPTLNGAKAFLKVRKDNTSLQSFDFPPFPIIANKNNNRETLVLVVSVLFGSSAILNAVLLVAICFSTSMIVQYKKKLRRVSRSETSVETNLRCFTYEELEEATNGFDKELGRGAFGIVYEGVVNNNTCSETRVAVKKLNNFLLDQAHREFRNELNVIGLTHHKNLVRLLGFCEGGSERLLVYEYMSNGTLASLLFNADEKQKPSWKLRLELAIGIARGLVYLHEECITRIIHCDIKPQNILLDDYFNARISDFGLAKLMNMNQSKTNTGIRGTKGYVALEWFKNMPITAQVDVYSYGVVLLEIISCRRCVQEMEQEDEEKAILTDWAYDCYKDGAVDALVEGDNEALDDKEKLEKLVMIAIWCVQEDPSLRPSMRNVIHMLEGTVEVQVPPYPSQISIQYSLI 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01575 820 Gene3D Transferase(Phosphotransferase) domain 1 602 806 - -
Vifa4g01575 820 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 602 806 - -
Vifa4g01575 820 Gene3D - 150 282 IPR036426 -
Vifa4g01575 820 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 22 148 - -
Vifa4g01575 820 FunFam S-receptor-like serine/threonine-protein kinase 490 601 - -
Vifa4g01575 820 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672|GO:0006468
Vifa4g01575 820 Gene3D - 19 149 IPR036426 -
Vifa4g01575 820 CDD STKc_IRAK 527 800 - -
Vifa4g01575 820 Pfam Protein tyrosine and serine/threonine kinase 523 798 IPR001245 GO:0004672|GO:0006468
Vifa4g01575 820 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 209 IPR036426 -
Vifa4g01575 820 ProSiteProfiles Bulb-type lectin domain profile. 19 148 IPR001480 -
Vifa4g01575 820 SMART serkin_6 521 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01575 820 Pfam D-mannose binding lectin 77 159 IPR001480 -
Vifa4g01575 820 CDD B_lectin 44 150 IPR001480 -
Vifa4g01575 820 Gene3D Phosphorylase Kinase; domain 1 483 601 - -
Vifa4g01575 820 SMART blect_4 35 150 IPR001480 -
Vifa4g01575 820 FunFam Uncharacterized protein 150 280 - -
Vifa4g01575 820 ProSiteProfiles Protein kinase domain profile. 521 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01575 820 PIRSF SRK 1 818 IPR024171 GO:0004674
Vifa4g01575 820 FunFam Serine/threonine-protein kinase 151 296 - -
Vifa4g01575 820 ProSitePatterns Protein kinases ATP-binding region signature. 527 554 IPR017441 GO:0005524
Vifa4g01575 820 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 35 810 - -
Vifa4g01575 820 SUPERFAMILY Protein kinase-like (PK-like) 502 811 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01575 Vifa-Chr4 459232323 459234785 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01575 507 810 Receptor kinase-like Gene Family AT1G60800 39.252 5.86e-70 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa4g01575 PK_Tyr_Ser-Thr 5.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01575 - - vra:106773297 1157.9