Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01574 ATGGCTTCCTCTCTATGTCTCTTTCTTCTCTACTCAGTCATTCTTCAATCGGCAATCTGTGTTGCAGCTCAAACCAAAAGTACTATAGCCATTGGTGATTCTCATACTGCTGAATCCAACACCTCCCCATGGTTGCTTTCACCTTCTGGTGACTTTGCCTTTGGTTTTCTACCACTTAATGACACTAATCTTTTTTTGCTTTCCATTTGGTATGCAAAAATCTCTGAGAACACTGTTGTGTGGTATGCTAATGGCGACAGTCCTGCACCCAAAGGGTCAAAAGTTGAACTCAATGCCAATGATGGGTTGGTGCTAACTTCTCCAAATGGTGTCGGGTTATGGAATACTACTGAGGTACTCAACAGTGGAGTTTCTCGAGGTGTGTTCAATGACACTGGCAATTTTGTGCTTCAGGATGGTAATTTCAACAATCTCTGGGAGACTTTCAAGCATCCAAATGACAACTTGTTGCCTTCTCAGGTTATTGACAAAGGTGTAAAGCTTAGTTCAAAGCTTAAGGAGAGGAATTTCAGTAAGGGCAGGTTTGAGCTCCTTTTACAAAATGATGGTAATCTTGTTATGTATTCTATTAATTTACCATCTGGTTATGCTAATGAAAACTACTATGAAAGTCAAACTGTTGGATCCAATAAATCAAGTGCTGGAACTCAATTGGTCTTTGACAGTTCAGGGGAGTTGTATGTCTTGAGAGAGAACAATGAGAAATTCAATATGTCAGGAAAAGATGGAGAAGATGATGACTCGAGTAAAGTCTCCACCACTGATTTTTATCTTAGAGCAACTCTTAATTTGGATGGAGTGTTTTCACTTTTCAAACATCCAAAGAGTTCAACTGATAGTAGTGGTTGGACTATAGTGTGGTCACATCCTGAAAATATATGTAGTTATATCGCTGTTGCAGGTTCTGGTGTTTGTGGATATAATAGCGTCTGCGCATTGGGAGATGATAAGAGACCAAGATGTCAATGTCCAAAAAGTTACTCACTTGTTGATCCTGATGATCCATATGGTAGCTGCAAGCCAGATTTCATACAAGGATGTGTAGAAGATGATCTCTATGACTTTGAGATTTTGACTGAAACTGATTGGCCTCTATCAGATTATGTGTCTCAAAAGCCTTTTACTGAAGAACAGTGTAGGAAATCTTGTCTGGAAGATTGTTTTTGTTCTGTGGCTATTTTCAGGACAGATAGTTGCTGGAAGAAGAAGTTACCACTCTCAAATGGGATATATGATGGCAGCACACTTGGTGATGCTAAGGCCTTCTTGAAAGTGAGAAAAGATAATACCTCAATCATTGTGAACAAGAATAATAATAGGGGAACTTTGGTATTGGTTGTTTCTGTGCTTTTTGGTAGCTCTGCTATTCTCAATGCTGTATTGATTGTAGCAATATGTGTCAGCACCTCGATGAGTCTTCAGTACGAGAAGAAACTTAGAAGAGTTAGCAGAAGTGACACTAGTGTTGAAACCAATTTGCGTTACTTCACTTACAAAGAGCTTGAAAAAGCTGCCAATGGATTTGACAAAGAGCTGGGAAGGGGAGCTTTTGGTATTGTTTATGAAGGAGTCATCAACAACAACACATGTTCTGAAACTCGCGTGGCAGTAAAAAAGTTGAACAATTTTTTGTTGGATCAAGCTCATAAGGAATTTAGAAATGAAGTGAATGGCATCGGTCTCACTCATCACAAAAATTTGGTTCGTTTACTTGGATTTTGTGAGGGTGGATCTGAAAGATTGTTGGTTTATGAGTACATGAGCAATGGCACTTTGGCAAATTTTCTTTTTAGTTCTTCTGATAAGAAACAAAGACCAAGTTGGAAACTAAGACTAGAAATTGCAATAGGGGTAGCTAGAGGACTTGTGTATTTACATGAAGAGTGCATCACTAGGATCATCCATTGTGACATAAAGCCTCAGAACATACTTCTTGATGATAATTTCAATGCAAGAATTTCTGACTTTGGATTGGCCAAGCTGTTGAACATGAATGAGAGCAAAACCAATACTGGCATAAGGGGGACAAAAGGGTATGTTGCAGTAGAATGGTTTAAAAACATGCCCATCACAACTATGGTGGATGTGTATAGTTATGGAGTAGTGCTACTAGAGATTATTTCATGTAGAAGATGTGTTCAAGAAATGGATCAAGGAGAAGAAGAGAAAGCAATATTAACTGATTGGGCTTATGATTGCTACAGAGATGGTGCTGTAGATGCATTGGTTGAGGGTGACAATGAGGCATTGGATGACAAAGGAAAGTTGGAGAAATTGGTAATGATTGCAATTTGGTGTGTTCAAGAGGATCCAGTTCTTAGACCAAGCATGAGAAATGTGATACATATGCTTGAAGGTACTGTTGAAGTGCAAGTTCCACCATACCCCTCTCCTGTTAGTATTCAATATTCTCTAATTTAA 2442 0.3882 MASSLCLFLLYSVILQSAICVAAQTKSTIAIGDSHTAESNTSPWLLSPSGDFAFGFLPLNDTNLFLLSIWYAKISENTVVWYANGDSPAPKGSKVELNANDGLVLTSPNGVGLWNTTEVLNSGVSRGVFNDTGNFVLQDGNFNNLWETFKHPNDNLLPSQVIDKGVKLSSKLKERNFSKGRFELLLQNDGNLVMYSINLPSGYANENYYESQTVGSNKSSAGTQLVFDSSGELYVLRENNEKFNMSGKDGEDDDSSKVSTTDFYLRATLNLDGVFSLFKHPKSSTDSSGWTIVWSHPENICSYIAVAGSGVCGYNSVCALGDDKRPRCQCPKSYSLVDPDDPYGSCKPDFIQGCVEDDLYDFEILTETDWPLSDYVSQKPFTEEQCRKSCLEDCFCSVAIFRTDSCWKKKLPLSNGIYDGSTLGDAKAFLKVRKDNTSIIVNKNNNRGTLVLVVSVLFGSSAILNAVLIVAICVSTSMSLQYEKKLRRVSRSDTSVETNLRYFTYKELEKAANGFDKELGRGAFGIVYEGVINNNTCSETRVAVKKLNNFLLDQAHKEFRNEVNGIGLTHHKNLVRLLGFCEGGSERLLVYEYMSNGTLANFLFSSSDKKQRPSWKLRLEIAIGVARGLVYLHEECITRIIHCDIKPQNILLDDNFNARISDFGLAKLLNMNESKTNTGIRGTKGYVAVEWFKNMPITTMVDVYSYGVVLLEIISCRRCVQEMDQGEEEKAILTDWAYDCYRDGAVDALVEGDNEALDDKGKLEKLVMIAIWCVQEDPVLRPSMRNVIHMLEGTVEVQVPPYPSPVSIQYSLI 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01574 813 ProSitePatterns Protein kinases ATP-binding region signature. 519 546 IPR017441 GO:0005524
Vifa4g01574 813 Pfam Protein tyrosine and serine/threonine kinase 515 791 IPR001245 GO:0004672|GO:0006468
Vifa4g01574 813 ProSiteProfiles Protein kinase domain profile. 513 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01574 813 CDD B_lectin 45 152 IPR001480 -
Vifa4g01574 813 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 36 803 - -
Vifa4g01574 813 SMART blect_4 34 152 IPR001480 -
Vifa4g01574 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 594 799 - -
Vifa4g01574 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Vifa4g01574 813 Gene3D Transferase(Phosphotransferase) domain 1 594 799 - -
Vifa4g01574 813 SUPERFAMILY Protein kinase-like (PK-like) 494 804 IPR011009 -
Vifa4g01574 813 Gene3D Phosphorylase Kinase; domain 1 487 593 - -
Vifa4g01574 813 CDD STKc_IRAK 519 793 - -
Vifa4g01574 813 Gene3D - 152 299 IPR036426 -
Vifa4g01574 813 Gene3D - 22 150 IPR036426 -
Vifa4g01574 813 PIRSF SRK 1 812 IPR024171 GO:0004674
Vifa4g01574 813 Pfam D-mannose binding lectin 78 162 IPR001480 -
Vifa4g01574 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 23 150 - -
Vifa4g01574 813 SMART serkin_6 513 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01574 813 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 211 IPR036426 -
Vifa4g01574 813 FunFam S-receptor-like serine/threonine-protein kinase 482 593 - -
Vifa4g01574 813 ProSiteProfiles Bulb-type lectin domain profile. 31 150 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01574 Vifa-Chr4 459207188 459209629 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01574 499 803 Receptor kinase-like Gene Family AT1G60800 39.375 3.80e-71 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa4g01574 PK_Tyr_Ser-Thr 2.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01574 - - gmx:100815462 1101.27