Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01573 ATGAATGAGAGCAAAACCAACACTGGCATAAGGGGGACAAAAGGGTATGTTGCAGTAGAATGGTTTAAAAACATGCCCATCACAACTATGGTGGATGTGTATAGTTATGGAGTAGTGCTACTTGAGATTATTTCATGTAGAAGATGTGTTCAAGAAATGGAACAAGAAGATGAAGAGAAAGCAATATTAACTGACTGGGCTTATGATTGCTACAAGGATGGTGCTGTAGATGCATTGGTTGAGGGTGACAATGAGGCATTGGATGACAAAGAAAAGTTGGAGAAATTGGTAATGATTGCAATTTGGTGTGTTTGTTGA 318 0.3868 MNESKTNTGIRGTKGYVAVEWFKNMPITTMVDVYSYGVVLLEIISCRRCVQEMEQEDEEKAILTDWAYDCYKDGAVDALVEGDNEALDDKEKLEKLVMIAIWCVC 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01573 105 Pfam Protein kinase domain 3 65 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01573 105 SUPERFAMILY Protein kinase-like (PK-like) 6 66 IPR011009 -
Vifa4g01573 105 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 104 - -
Vifa4g01573 105 Gene3D Transferase(Phosphotransferase) domain 1 1 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01573 Vifa-Chr4 458542482 458542799 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01573 2 104 Receptor kinase-like Gene Family AT5G39000 35.922 2.59e-16 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa4g01573 Pkinase 4.7e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01573 - - mtr:11434023 191.43