Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01572 ATGGCTTCATCTATGCTTCTCTTTCTCCTCTACTCTCTCATTCTTCAATCTATCAGTGTTGCAGCTCAAACCAAAAGTACTATAGCCATTGGTGATTCTCATACTGCTGAATCCAACACCTCCCCATGGTTGCTTTCACCTTCTGGTGACTTTGCCTTTGGTTTTCTACCACTTAATGACACTAATCTTTTTTTGCTTTCCATTTGGTATGCAAAAATCTCTGAGAGCACTGTTGTGTGGTATGCTAATGGCGACAGTCCTGCACCCAAAGGGTCGAAAGTTGAACTCAATGCCAATGATGGGTTGGTGCTAACTTCTCCAAATGGTGTCGGGTTATGGAATACTACTGAGGTACTCAATAGTGGAGTTTCTCGAGGTGTGTTCAATGACACTGGCAATTTTGTGCTTCAGGATGGTAATTTCAACAATATCTGGGAGACTTTCAAGCATCCAAATGACAACTTGTTGCCTTCTCAGGTTATTGACAAAGGTGGAAAGCTCTCTTCAAGGCTTAAGGAGTCAAATTTCAGTAAAGGAAGGTTCGAGCTCCTTTTACAAGATGATGGTAATCTTGTTATGCATTCTATTAATCTACCATCTGGTTATATTAATAAAGAAAACTACTATGAAAGTAAAACTGTTGGATCCGATACATCAAGTGCTGGAACTCAATTGGTCTTTGACAGATCAGCGTACTTGTATGTCTTGGGAGAGAAAAATGAGAAATACAATGTGTCAGAACAAGAGAGTGGAGTCTCTACCATAGATTTTTATCTTAGAGCAACTCTTAATTTTGATGGAACGTTCACACTTTTTAAGCATCCAAAGAGTTCAACCGAGAGTGAAGGTTGGACCATAGTGTGGACTATGCCTGATAATATATGCACTTATAATGTTGAGTTAGGTAGTGGTGTTTGTGGATATAATAGCTTCTGCAAATTGGGAAATGATAAGAGACCAACATGTCAGTGTCCAAACAGATACTTACTGGTTGATCCTGATGATCCATTTGGTAGCTGCAAGCCTGATTTCATACAAGGATGTGCAGAAGATGAACTAAGTAAAAATAGAAATGATCTCTATGTCTTTGATACTTTGACTCAAATTGACTGGCCTAAAGCAGATTCCGTGCTTCAAAAACCTTTTACGGAAGAAGAATGTAAGAAAGCTTGTATGGATGATTGTTTTTGTTCTGTGGCTATTTTCCGGTTAGGTGATAGTTGCTGGAAGAAGAAGTTACCACTCTCAAATGGGATATATGATGCCGCCACACTTAGTGATGCTAAGGCCTTCTTGAAAGTGAGAAAAGATAATACCTCCTATGTTTTTCCTCCAGCTCCAATCATTGTGAACAAGACTAATAATAGGGGAACTTTGGTCTTGGTTGTTTCTGTGCTTTTTGGTAGCTCTGCTATTCTCAATGTTGTATTGAGTGTAGCAATATGTGTTGGCACCACCATTATTTTTCAGTACAAGAAGAAGCTTAGAAGATTTAGCCAAAGTGATACTGGTGTTTCAACCAATTTGCGTTGCTTCACTTACGAAGAGCTTGAAGAAGCAACCAATGGATTTGACAAAGAGCTAGGAAGGGGAGCTTTTGGTATTGTTTATGAAGGAGTCATCAATAACAACACAAGTTCTGAAACTCGCGTGGCAGTGAAAAAGTTGAACAGTTTTTTGTTGGATCAGGCTCATAAGGAATTTAGGAATGAAGTGAATGTCATTGGTGTCACTCATCACAAGAACTTGGTTCGTTTACTTGGATTTTGTGAGAGTGGACGTGAAAGATTGCTTGTTTATGAGTACATGAGCAATGGTACTTTGGCACATTTTCTTTTCAATGCTGATGATGAGAAACAAAAACCAAGTTGGAAACTAAGACTAGAAATTGCAATAGGGGTAGCTAGAGGTCTTGTGTATTTACATGAAGAGTGCATCACTAGGATCATCCATTGTGACATAAAGCCCCAAAACATACTCCTTGATGGTAATTTCAATGCGAGAATTTCTGACTTTGGATTGGCCAAGCTGTTGAACATGAATGAGAGCAAAACCAACACTGGCATAAGGGGGACAAAAGGGTATGTTGCAGTAGAATGGTTTAAAAACATGCCCATCACAACTATGGTGGATGTGTATAGTTATGGAGTAGTGCTACTTGAGATTATTTCATGTAGAAGATGTGTTCAAGAAATGGAACAAGAAGATGAAGAGAAAGCAATATTAACTGACTGGGCTTATGATTGCTACAAGGATGGTGCTGTAGATGCATTGGTTGAGGGTGACAATGAGGCATTGGATGACAAAGAAAAGTTGGAGAAATTGGTAATGATTGCAATTTGGTGTGTTTGTTGA 2355 0.3898 MASSMLLFLLYSLILQSISVAAQTKSTIAIGDSHTAESNTSPWLLSPSGDFAFGFLPLNDTNLFLLSIWYAKISESTVVWYANGDSPAPKGSKVELNANDGLVLTSPNGVGLWNTTEVLNSGVSRGVFNDTGNFVLQDGNFNNIWETFKHPNDNLLPSQVIDKGGKLSSRLKESNFSKGRFELLLQDDGNLVMHSINLPSGYINKENYYESKTVGSDTSSAGTQLVFDRSAYLYVLGEKNEKYNVSEQESGVSTIDFYLRATLNFDGTFTLFKHPKSSTESEGWTIVWTMPDNICTYNVELGSGVCGYNSFCKLGNDKRPTCQCPNRYLLVDPDDPFGSCKPDFIQGCAEDELSKNRNDLYVFDTLTQIDWPKADSVLQKPFTEEECKKACMDDCFCSVAIFRLGDSCWKKKLPLSNGIYDAATLSDAKAFLKVRKDNTSYVFPPAPIIVNKTNNRGTLVLVVSVLFGSSAILNVVLSVAICVGTTIIFQYKKKLRRFSQSDTGVSTNLRCFTYEELEEATNGFDKELGRGAFGIVYEGVINNNTSSETRVAVKKLNSFLLDQAHKEFRNEVNVIGVTHHKNLVRLLGFCESGRERLLVYEYMSNGTLAHFLFNADDEKQKPSWKLRLEIAIGVARGLVYLHEECITRIIHCDIKPQNILLDGNFNARISDFGLAKLLNMNESKTNTGIRGTKGYVAVEWFKNMPITTMVDVYSYGVVLLEIISCRRCVQEMEQEDEEKAILTDWAYDCYKDGAVDALVEGDNEALDDKEKLEKLVMIAIWCVC 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01572 784 ProSiteProfiles Protein kinase domain profile. 522 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01572 784 Gene3D Phosphorylase Kinase; domain 1 496 602 - -
Vifa4g01572 784 CDD B_lectin 44 151 IPR001480 -
Vifa4g01572 784 ProSiteProfiles Bulb-type lectin domain profile. 30 149 IPR001480 -
Vifa4g01572 784 ProSitePatterns Serine/Threonine protein kinases active-site signature. 649 661 IPR008271 GO:0004672|GO:0006468
Vifa4g01572 784 PIRSF SRK 1 784 IPR024171 GO:0004674
Vifa4g01572 784 ProSitePatterns Protein kinases ATP-binding region signature. 528 555 IPR017441 GO:0005524
Vifa4g01572 784 Gene3D - 20 149 IPR036426 -
Vifa4g01572 784 SUPERFAMILY Protein kinase-like (PK-like) 504 746 IPR011009 -
Vifa4g01572 784 Gene3D - 152 298 - -
Vifa4g01572 784 Gene3D Transferase(Phosphotransferase) domain 1 603 784 - -
Vifa4g01572 784 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 603 784 - -
Vifa4g01572 784 SMART serkin_6 522 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01572 784 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 34 783 - -
Vifa4g01572 784 SMART blect_4 33 151 IPR001480 -
Vifa4g01572 784 FunFam S-receptor-like serine/threonine-protein kinase 492 602 - -
Vifa4g01572 784 Pfam Protein tyrosine and serine/threonine kinase 524 740 IPR001245 GO:0004672|GO:0006468
Vifa4g01572 784 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 22 149 - -
Vifa4g01572 784 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 194 IPR036426 -
Vifa4g01572 784 Pfam D-mannose binding lectin 77 161 IPR001480 -
Vifa4g01572 784 FunFam Serine/threonine-protein kinase 152 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01572 Vifa-Chr4 458540445 458542799 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01572 484 782 Receptor kinase-like Gene Family AT1G60800 38.636 4.86e-63 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa4g01572 PK_Tyr_Ser-Thr 3.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01572 - - gmx:100815462 1041.57