Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01559 ATGGCCGAGCAAATGGTATACGTTGTTGCTGAAAACCTCATTAAAAGGTTGGCTTCTGCTGCTTTTCGTGAATTTGGAAGGATTTATGGTGTTATGGATGAATTGGAAAGTCTTAGAAAAACTTTTGAGCTCATCAAAGATGTGCTCCTTGATGCCGAGGACAAGCAACAACAAAATCGTGCCATACAGATCTGGATAACTAGACTCAAAGATGATGTGTTTCATCCTGCTGATAACTTGCTTGATGAGTTTCTTATTCAAGATATGAGTCACAAAACTCAAAAGAACAAAATGACAAAGGTACTTCATTCCTTCTCTACAAACAAAATTGTTTTTCGCAGTAGAACTGCTCATGAGATTGAAAAAATACAAAAGAAGTGTAATGATATTGCCAAAGATATGTTTTATTTGAATCTGAACCCAAACCTTGTGGTGGTTGAACATAGTAACAATGTAAAGAGGGAAACTAGTTCTTTTGTGTTCGAATCAGATATCACCGGAAGAGAAGATGATAAAAAAAAGATCATAAGCTTGTTGAGGCAACCACATGATGAAAATCACCATGTCTCTGTGGTTGCTATTGTTGGGATTGGTGGATTGGGAAAGACTGCTCTTGCTCAGTTGGTATACAATGATCGTGAAGTAAAAGACATGTTTGAAAAGAGTATGTGGGTATGTGTCTCTGATAACTTTGATGTCAAAACTATTGTTAAGACAATAATTGAGTCACTAACCGATAGCAAAATTGGTGATACTTTACCATTGGAAAACTTGCATAATATGCTTTGTGACAATTTAACAGGTAAGAAATACTTGTTATTTTTAGATGACATTTGGAACGAGAATGCTGAAAAATGGGCTCGGTTGAGGACTTCTTTGATGTGTGGTGCTCAAGGCAGTAAGATTGTAGTTACAACTCGTTCTAAAATAGTAGCACAAACAATGGGTGTAAGTGTCCCCTATATTTTGAATGGTTTGAATTCAATAGAATCTTGGAGTTTATTGAAGAACATTGTAACATATGGAGATGAGATCAAAGTAGTGAACCAAAAACTTGAATCAATTGGTAAGAAGATAGTAGAAAAGTGCAGTGGTGTTCCGCTAGCAATCAAAATGCTGGGAGGCCTATTACGGCGCCATAGTAAAGAAAATGAATGGATTGCTATTTTACATGGTGACTTTTGGAAAAGTCAATATGAAAAAAGCATAATTCCAGTGTTAAAACTAAGTTACCAAAACTTGTCGCCTCGACTAAAACAATGTTTTGCTTATTGCTCTTTATATCCTAAGGATTGGGAAATACCAAAGGATGAGTTGATTCAACTTTGGATGGCACAAGGTTATCTTGAATTTTCAAATGAAAAACAGACCATGGAAGATATTGCCGGCAATGATTGTTGTTACCTGGATAGTGAGACAAAAAGAGTTGTTGGAAGTCCCATGCATGTAATGTTGAAAAGTGATGCTATTGGTTTGTCAAAGTCAATGGATGCAAGTAGGATGCGGACATTGATTTTCTTGTCCAAACATCAAGATATTTGGAATGAGAAGGAATTGCCTGTTAATTTAAAATTCAAATACTTACATGCCTTGAAGTTGTCATATTGTTCTATAAGACTAGAAGACCTTTTCAAATCCATTGGTAACATTGTTTGTCTTCAAACACTAATATTGGAAGGGTGTGAAGGAGTTGAGTTTTCTACAAAAGATATCTTAAGTTTATTTAATTTGAGACACCTTCATATTGAAAATTTAAAAGCATTTAAAGAGAAGAAGACAACAGCTGGATTTGGAAAATTAAGCTTGGGGGAGTGGTATAAGAGTTTAACTTTTTCCAATTGGCTTTCTTCACTCACAAACATTGTTGAAATATTTCTTATTAAGTGTCAAGGTGTGCAGTATCTCCAACCAATTGAACGTCTCCCATTCCTAAAGTCACTTGTTATTGATGACCTTCATGAATTGGAGTACATATATTATGAAGAGTCTCTTTTGACTGAAGCATTCTTCCCTTCTTTGGAGGTCCTCAGAATTTTTGGATGTGAAAAGTTGAAGGGATGGTGGAGGGTAAGGGATGATATCATTGGTGATGATAACTCTTCACAATCATATCATCTCTCCTTTTTTCCTTGTCTTTCTTACTTAACTATCATTGATTGTCCAATGTTGACTCACATGCCTACTTTTCCAAACCTCTACAAGAAATTTGTTTTTTGGAATTGTAAAATGGACGCATTGGAAGCAACATTAAACATGGTAAAATCAAATGGTTCCATTGCATTCCTTCCACTTTCCATGCTAAAAGATCTGTTTCTTGGCGGACATGAGCTGGACGTTAAAGCACTCCCAAATGATTGGATGGAAAATCTGACTTCTCTCAAGCATCTTGTATTTTATGATATTCCAAATCAAACATTTCATGAAATTGAAATTTGTTTTAAGGACAAACTCATTTGTCTTCCTTCCTTGCAAAAGATTGAAATTTCAGATTGTTCCGACCTAGAGGCATTTCCAGTTTGGATTTGCAACATTCCGTCACTTCAACATATCATCATTTCAGAATGTAAAATTTTAGCTTCACTGCCCGATGGAATGCCTCGCCTTGCTAAATTACAGACCCTAGAAATCATTGAGTGTCCTCTCTTAATTGAGGAATGCCGGACAGAAACAAGTGCGACATGGTCTAAAATTGCTCACATCCCCAACATAATCTTAAAGTGA 2721 0.3583 MAEQMVYVVAENLIKRLASAAFREFGRIYGVMDELESLRKTFELIKDVLLDAEDKQQQNRAIQIWITRLKDDVFHPADNLLDEFLIQDMSHKTQKNKMTKVLHSFSTNKIVFRSRTAHEIEKIQKKCNDIAKDMFYLNLNPNLVVVEHSNNVKRETSSFVFESDITGREDDKKKIISLLRQPHDENHHVSVVAIVGIGGLGKTALAQLVYNDREVKDMFEKSMWVCVSDNFDVKTIVKTIIESLTDSKIGDTLPLENLHNMLCDNLTGKKYLLFLDDIWNENAEKWARLRTSLMCGAQGSKIVVTTRSKIVAQTMGVSVPYILNGLNSIESWSLLKNIVTYGDEIKVVNQKLESIGKKIVEKCSGVPLAIKMLGGLLRRHSKENEWIAILHGDFWKSQYEKSIIPVLKLSYQNLSPRLKQCFAYCSLYPKDWEIPKDELIQLWMAQGYLEFSNEKQTMEDIAGNDCCYLDSETKRVVGSPMHVMLKSDAIGLSKSMDASRMRTLIFLSKHQDIWNEKELPVNLKFKYLHALKLSYCSIRLEDLFKSIGNIVCLQTLILEGCEGVEFSTKDILSLFNLRHLHIENLKAFKEKKTTAGFGKLSLGEWYKSLTFSNWLSSLTNIVEIFLIKCQGVQYLQPIERLPFLKSLVIDDLHELEYIYYEESLLTEAFFPSLEVLRIFGCEKLKGWWRVRDDIIGDDNSSQSYHLSFFPCLSYLTIIDCPMLTHMPTFPNLYKKFVFWNCKMDALEATLNMVKSNGSIAFLPLSMLKDLFLGGHELDVKALPNDWMENLTSLKHLVFYDIPNQTFHEIEICFKDKLICLPSLQKIEISDCSDLEAFPVWICNIPSLQHIIISECKILASLPDGMPRLAKLQTLEIIECPLLIEECRTETSATWSKIAHIPNIILK 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01559 906 Gene3D - 325 410 IPR042197 -
Vifa4g01559 906 Pfam NB-ARC domain 169 412 IPR002182 GO:0043531
Vifa4g01559 906 SUPERFAMILY L domain-like 516 898 - -
Vifa4g01559 906 PANTHER DISEASE RESISTANCE PROTEIN RP 33 720 IPR044974 GO:0006952
Vifa4g01559 906 FunFam Probable disease resistance protein At1g61300 147 320 - -
Vifa4g01559 906 PRINTS Disease resistance protein signature 818 834 - -
Vifa4g01559 906 PRINTS Disease resistance protein signature 265 279 - -
Vifa4g01559 906 PRINTS Disease resistance protein signature 191 206 - -
Vifa4g01559 906 PRINTS Disease resistance protein signature 363 377 - -
Vifa4g01559 906 Gene3D - 147 321 IPR027417 -
Vifa4g01559 906 Gene3D - 10 121 - -
Vifa4g01559 906 Gene3D Ribonuclease Inhibitor 517 740 IPR032675 -
Vifa4g01559 906 Gene3D Ribonuclease Inhibitor 741 895 IPR032675 -
Vifa4g01559 906 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 425 IPR027417 -
Vifa4g01559 906 Pfam Rx N-terminal domain 11 98 IPR041118 -
Vifa4g01559 906 Gene3D - 411 469 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01559 Vifa-Chr4 455829395 455832384 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01559 180 449 WRKY Transcription Factor Family AT5G45050 23.913 4.71e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01559 - - tpra:123883200 1111.67