LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa4g01558	ATGTTTCCATCTTCTTCTTCATCTTCTGGTCCTCTATGGATACACGACGTGTTCGTCAACTTCCGAGGTAAAGACACTCGTCGTAACATCGTTGCTCATCTAGTTGCTGCACTAAAAAATGCCGGAGTCAACACTTACATGGACGACCAGCTTCACACCGGAACCGAATTGGGACACCAATTATTGGGAGCAATAGAAAATTCTCATATATCTATACTGGTTTTCTCCAAAAACTACACTGAATCTACTTGGTGTCTTAAGGAGTTGGAAAAAATCATGGAATGTCACAGATCTAATGGCCAATTGGTTGTCCCTGTGTTTTATTATCTCGACCCTTCCGTTGTTCGTCACCAGAACGGTGATTTTGGAAAGGTTTTGAGGGCTACTGCAAAAAAAGTATGCTTTCGCTCAGGAGGAGAGAAGATGGAAAAATTATTGTCAAATTGGACCGCTGCACTCACCCAAGCCGCTAATTTCGCTGGTTGGGATGTCAACAATTACAGGAGTGAAGGTGAACTAGTGAAGCAAATTGTTGAAGATGTTTTGGCAAAACTAAAGAGCACATTCTTGTCTATTACTGAATTTCCAGTTGGATTGGAATCCCGGGTGCAAAAAGTGAATCACTTCATTGAAAATCAACTAAAGAAAGTTTGTGTGATTGGGATATGGGGGATGGGCGGATCTGGTAAAACAACCACAGCTAAAGCTATCTACAATCAAATTCACCGCAAATTTGTTGATAGAAGTTTTGTTGAAAATGTTAGAGAAGTATGTGAAAAGGAAAATAGAGGGATTATTCATTTACAACAACAACTACTTTCAGATATCTTGAGCACAAAGAAGAAGATACATAGTATTGCATTAGGGACAGCTGAGATTGAGAAGAGATTCCAGGCGAAAAAGGCACTCATTGTACTGGATGATGTGACCACAGTTGAACAATTAAAATCTCTCTGTGGAAATCCTAAATTGTTTTGTCCAGGAACTGTATTAATTGTTACAACTAGAGATAAACGCCTACTTAAGTTATTTAAGGTTGATTATTTATGCACAATGAAGGAAATGAATGAAACTGAGTCACTTGAGCTTTTCTGTTGGCATGCTTTTAGACAACCTAGTCCAGTAAAAGACTTTTGTAAACTCTCGGGGAAAGTAGTTGCTTATTGTGGAGGATTACCGGTTGCTCTTGAAGTCCTTGGTTCTTACTTATATGAGAGAACAAAAGAAGAATGGGAAAGTGTACTGTCAAAATTAGAGAGAATTCCCAATGATCAAGTGCAAGAAAAGTTGAGAATAAGTTACGATGGTTTAAAGGATGATATGACAAAAGATATATTTCTTGACATATGTTGTTTCTTTATCGGCAAGGACAGAGCTGATGTTACAGAAATATTAAATGGATGCGGACTTTATGCTGGTATTGGATTAACTATCCTTGTAGAGAAGAGCCTTGTAAAAATTGAAAAGAATAACAAGCTTGGAATGCATGATTTAATTAGAGACATGGGAAGAGAAATTGTTCGTGAAAGTTCAACAAACGAGCCTGGCAAGCGAAGTAGGTTGTGGTTTGGTGAGGATGTACATGACATGTTGACAAAAAATACTGGAACATATACTGTTGAGGGATTGGTTTTGAAGGTGCAAAGAACCAATAGAGTCATCTTAAGTACCGACTCTTTCAAGGATATGAATAAATTGAGACTTTTAGAACTTGATCATGCTGTCCTCGATGGAGATTATAGGCTTCTTTCCAAAGAACTAAGGTGGGTCTACTGGCAAGGATTTACCTTCAACTATTTACCTGACGACTTTTATCAGGGAAATCTAGTTGTTATTGTCGTAAAATACAGCAGTATCATACAAGTGTGGAAGGAAGCCAAGTTGTTGGATAAACTAACAATTCTCAACGTCAGTCATTCTGCATACTTGAAAAACACCCCTGATTTTTCAAAATTGCCAAATCTAGAAAAGCTTATTATGAAGAATTGTTCATGTTTGGCCGAGATTACAAAGTTGGAAGAAGACATAGTGCAGATGGAATCCTTGGATTATCGCGTGCTGTTTTTCCCTCCCTCATTTGGTCTTGGATGTCACCAACGATCACTTTTGATTGGAATGGGAAGTTTCAAATTAGTAATTGACACTCTTGGCGAAAGCATATCACAGGGATTGGCAGAAAATTGTCCCGGTAACTTTGGTCTCCCGGATGACAATTATCCTTCTTGGTTAGCCTATAAAGTGTCTTGA	2247	0.3832	MFPSSSSSSGPLWIHDVFVNFRGKDTRRNIVAHLVAALKNAGVNTYMDDQLHTGTELGHQLLGAIENSHISILVFSKNYTESTWCLKELEKIMECHRSNGQLVVPVFYYLDPSVVRHQNGDFGKVLRATAKKVCFRSGGEKMEKLLSNWTAALTQAANFAGWDVNNYRSEGELVKQIVEDVLAKLKSTFLSITEFPVGLESRVQKVNHFIENQLKKVCVIGIWGMGGSGKTTTAKAIYNQIHRKFVDRSFVENVREVCEKENRGIIHLQQQLLSDILSTKKKIHSIALGTAEIEKRFQAKKALIVLDDVTTVEQLKSLCGNPKLFCPGTVLIVTTRDKRLLKLFKVDYLCTMKEMNETESLELFCWHAFRQPSPVKDFCKLSGKVVAYCGGLPVALEVLGSYLYERTKEEWESVLSKLERIPNDQVQEKLRISYDGLKDDMTKDIFLDICCFFIGKDRADVTEILNGCGLYAGIGLTILVEKSLVKIEKNNKLGMHDLIRDMGREIVRESSTNEPGKRSRLWFGEDVHDMLTKNTGTYTVEGLVLKVQRTNRVILSTDSFKDMNKLRLLELDHAVLDGDYRLLSKELRWVYWQGFTFNYLPDDFYQGNLVVIVVKYSSIIQVWKEAKLLDKLTILNVSHSAYLKNTPDFSKLPNLEKLIMKNCSCLAEITKLEEDIVQMESLDYRVLFFPPSFGLGCHQRSLLIGMGSFKLVIDTLGESISQGLAENCPGNFGLPDDNYPSWLAYKVS	748

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa4g01558	748	SMART	till_3	14	159	IPR000157	GO:0007165
	Vifa4g01558	748	Gene3D	-	11	193	IPR035897	-
	Vifa4g01558	748	FunFam	Disease resistance protein (TIR-NBS-LRR class)	356	438	-	-
	Vifa4g01558	748	Gene3D	Ribonuclease Inhibitor	535	688	IPR032675	-
	Vifa4g01558	748	Pfam	NB-ARC domain	203	428	IPR002182	GO:0043531
	Vifa4g01558	748	Gene3D	-	354	438	IPR042197	-
	Vifa4g01558	748	PRINTS	Disease resistance protein signature	389	403	-	-
	Vifa4g01558	748	PRINTS	Disease resistance protein signature	650	666	-	-
	Vifa4g01558	748	PRINTS	Disease resistance protein signature	296	310	-	-
	Vifa4g01558	748	PRINTS	Disease resistance protein signature	219	234	-	-
	Vifa4g01558	748	Pfam	TIR domain	15	193	IPR000157	GO:0007165
	Vifa4g01558	748	Gene3D	-	197	316	IPR027417	-
	Vifa4g01558	748	SUPERFAMILY	"Winged helix" DNA-binding domain	425	531	IPR036390	-
	Vifa4g01558	748	FunFam	Disease resistance protein (TIR-NBS-LRR class)	12	187	-	-
	Vifa4g01558	748	ProSiteProfiles	TIR domain profile.	13	185	IPR000157	GO:0007165
	Vifa4g01558	748	SUPERFAMILY	Toll/Interleukin receptor TIR domain	4	162	IPR035897	-
	Vifa4g01558	748	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	15	682	IPR044974	GO:0006952
	Vifa4g01558	748	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	187	449	IPR027417	-
	Vifa4g01558	748	SUPERFAMILY	L domain-like	544	683	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa4g01558	Vifa-Chr4	455460368	455468468	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa4g01558	2	664	WRKY Transcription Factor Family	AT4G12020	27.672	5.84e-64	230

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa4g01558	-		-	cam:101511388	956.436