Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01553 ATGACCAGCAGCAAAAACAACCAAACCGAAACAGTAAACTCACTAGATTTCAAAAAACTAAAAATCATATCCGCCGTAGGACGCGGCGCCAAGGGCGTCGTGTTTCTCGCTCGAACCGGTAACCGGTCATCAGACGAGTGCCTTGCTCTGAAAGTAACATCAAAAGCACTAATACAACAAAAGAACGCAAAGAACAATTCAAAAGACTCTGGAGAATACAAGAGAGCGTCGTTTGAAGAAGAAGTGCTACGTCGTTTCGATCATCCTCTTTTACCACGGTTGCAAGGTGTTTTCGAAACCGAGAAAATCGTTGGATTCGCCATTGATTATTGCCATGGTGGTAACCTCCATTCTCTCCGAAAGAAACAAACTGAGAAAATGTTCTCCGATGATGCCATTAGGTTTTACGCTGCTGAAATGGTTCTTGCATTGGAGTATCTGCATGATTTAGGAATAGTGTATAGAGATTTGAAACCAGAAAACGTGATGATTCAAGAAAACGGTCACATAATGCTCGTAGATTTCGATCTATCTACAAAGCTGAAATCTAAATCGCCGCCACCTCAATCACTGAGCAATGACTCGTCGGATAGATCTAAGTCTAACTTATCGAAACACGCGAGGAAGCGGTTGATCTCGCGATTCTACCGGTGTAACTCGGGGATCGCACCGTGTGACGCGGATCTTGACTCGCAACCTTGTGTGAACACAGTGAATAGAAACGAGCCGGAAACGGTTGAAAAATCGAACTCGTTCGTTGGAACGGAAGATTACGTGGCACCTGAAATCGTACTTGGAAAAGGTCACGGTTTTGAAGTTGATTGGTGGTCGTTAGGTGTCGTTTTACACGAGATGTTGTATGGAACGACGCCGTTTAACGGAACGAATAGAAAAGAAACGTTTTACAGGATTTTGTCTAAGGAACCGGAGTTAACGGGTGAGAAAACGGCGTTAAGGGACTTAATTAGGAAATTGTTGGAAAAAGATCCTGACCGTAGGATCAGGTTGGATGAAATCAAGTGTCATGATTTCTTCAAAGGAGTTATGTGGGACAGGGTGGTTGAATTGGCGAGACCACCTTATATTCCTTGTATTGACGTTGAGAATGAGAATACTAAAGGGTATAGCAAAAAATATGTGGAGGTTTTTGTTCATGAAGTGTTTTTTCCTGAGGGGGATGATAATAAAGAAGAGAAAAATAATAAAATGGAAGATAAGCAGCTTAATCACGAGGATAAAACTGTTTGGGTTGATAAATTGAGTAGTAGTCTCAATGAGAATGAGGATTTTTTAATTTTCTGA 1302 0.4171 MTSSKNNQTETVNSLDFKKLKIISAVGRGAKGVVFLARTGNRSSDECLALKVTSKALIQQKNAKNNSKDSGEYKRASFEEEVLRRFDHPLLPRLQGVFETEKIVGFAIDYCHGGNLHSLRKKQTEKMFSDDAIRFYAAEMVLALEYLHDLGIVYRDLKPENVMIQENGHIMLVDFDLSTKLKSKSPPPQSLSNDSSDRSKSNLSKHARKRLISRFYRCNSGIAPCDADLDSQPCVNTVNRNEPETVEKSNSFVGTEDYVAPEIVLGKGHGFEVDWWSLGVVLHEMLYGTTPFNGTNRKETFYRILSKEPELTGEKTALRDLIRKLLEKDPDRRIRLDEIKCHDFFKGVMWDRVVELARPPYIPCIDVENENTKGYSKKYVEVFVHEVFFPEGDDNKEEKNNKMEDKQLNHEDKTVWVDKLSSSLNENEDFLIF 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01553 433 Pfam Protein kinase domain 248 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01553 433 Pfam Protein kinase domain 22 186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01553 433 SMART serkin_6 20 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01553 433 ProSiteProfiles Protein kinase domain profile. 20 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01553 433 MobiDBLite consensus disorder prediction 182 198 - -
Vifa4g01553 433 FunFam Serine/threonine-protein kinase OXI1 115 183 - -
Vifa4g01553 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Vifa4g01553 433 SUPERFAMILY Protein kinase-like (PK-like) 13 364 IPR011009 -
Vifa4g01553 433 Gene3D Transferase(Phosphotransferase) domain 1 247 364 - -
Vifa4g01553 433 Gene3D Transferase(Phosphotransferase) domain 1 115 184 - -
Vifa4g01553 433 Gene3D Phosphorylase Kinase; domain 1 20 114 - -
Vifa4g01553 433 FunFam Serine/threonine-protein kinase OXI1 247 364 - -
Vifa4g01553 433 MobiDBLite consensus disorder prediction 181 204 - -
Vifa4g01553 433 PANTHER FLIPPASE KINASE 1-RELATED 10 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01553 Vifa-Chr4 454335528 454336926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01553 14 433 AGC Kinase Gene Family AT3G25250 53.882 1.60e-147 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vifa4g01553 Pkinase 1.1e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01553 K20714 - gmx:100785773 532.717