Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01551 ATGCCGCCAAACCCTGCGGAGGTGAAACAAGCGGAGCTTTTGAGAAACGACGGAAACAATTACTTCAAGAAAAGCCGTTTCGGAGCAGCAATCGACGCCTACACTCAGGCAATAACGTTTTGCCCTAATATTCCGGTTTATTATACCAATCGTGCTCTTTGCCATCTCAAGCGCAATGAATGGGAGAGGGTTGAGGAAGACTCTAGAAGAGCAATTCAGCTGGACAGCAAATCGGTTAAGGCGCACTATATTTTGGGACTTGCGTTGCTACAGAAACAAGAGCTTCCAAAAGGAATCAAAGAATTGGAAAAGGCTTTGAATCTGGGGAGAGGTGCCGATCCACAAGGTTATATGGTAGAAGAAATATGGCAAGCACTTGCAAGAGCAAAATACAAAGAGTGGGAACATGCATCATCCCAGCGATCTTGGGACTTGCAGAACTTGAAAGAAGCCTGTGTGTCTGCTCTAAAGGAAAAACAATATCTCGGAGACATCTCTGAGTCAGAAGGATTTGTAGATGATGCTACTACTCCCTATTTGAAACGTTTGGAGGCTATTGAAAGGGTTTTCAATAAAGCTGCAGAAGACGATATACCAGCTGAGATTCCAGGTCATCTATGCTGTAGAATTACACTTGATATTTTTCATGATCCTGTAATCACTCCGAGTGGACTTACATATGAGAGGGCAATGCTTCTTGATCATCTTCAGAAGGTGGGTGGTTTTGATCCAATCACGAGGGAACAATTTGATCCGTCACAACTAGTACCAAACTTGGCCATTAAGGAAGCAGTCCATGAATTCTTGGACAAACATGGGTGGGCTTACAAGATAGATTAA 840 0.4345 MPPNPAEVKQAELLRNDGNNYFKKSRFGAAIDAYTQAITFCPNIPVYYTNRALCHLKRNEWERVEEDSRRAIQLDSKSVKAHYILGLALLQKQELPKGIKELEKALNLGRGADPQGYMVEEIWQALARAKYKEWEHASSQRSWDLQNLKEACVSALKEKQYLGDISESEGFVDDATTPYLKRLEAIERVFNKAAEDDIPAEIPGHLCCRITLDIFHDPVITPSGLTYERAMLLDHLQKVGGFDPITREQFDPSQLVPNLAIKEAVHEFLDKHGWAYKID 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01551 279 ProSiteProfiles U-box domain profile. 201 275 IPR003613 GO:0004842|GO:0016567
Vifa4g01551 279 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 8 277 IPR045200 GO:0000209|GO:0061630
Vifa4g01551 279 Gene3D Tetratricopeptide repeat domain 5 141 IPR011990 GO:0005515
Vifa4g01551 279 Pfam U-box domain 202 274 IPR003613 GO:0004842|GO:0016567
Vifa4g01551 279 SMART tpr_5 45 78 IPR019734 GO:0005515
Vifa4g01551 279 SMART tpr_5 79 112 IPR019734 GO:0005515
Vifa4g01551 279 SMART tpr_5 11 44 IPR019734 GO:0005515
Vifa4g01551 279 CDD RING-Ubox_CHIP 202 272 IPR045202 -
Vifa4g01551 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 278 IPR013083 -
Vifa4g01551 279 SUPERFAMILY TPR-like 9 132 IPR011990 GO:0005515
Vifa4g01551 279 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Vifa4g01551 279 SUPERFAMILY RING/U-box 195 276 - -
Vifa4g01551 279 SMART Ubox_2 205 268 IPR003613 GO:0004842|GO:0016567
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01551 11 278 U-box Gene Family AT3G07370 63.806 1.49e-130 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01551 K09561 - gmx:100796519 451.055